BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00023309
         (559 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002262998.2| PREDICTED: mutS protein homolog 4-like, part...   297   7e-79
emb|CBI37367.3| unnamed protein product [Vitis vinifera]              297   7e-79
emb|CAN68921.1| hypothetical protein VITISV_008586 [Vitis vinifera]   296   1e-78
ref|XP_004169721.1| PREDICTED: DNA mismatch repair protein MSH4-...   293   2e-77
ref|NP_193469.2| DNA mismatch repair protein MSH4 [Arabidopsis t...   279   2e-73

>ref|XP_002262998.2| PREDICTED: mutS protein homolog 4-like, partial [Vitis vinifera]
          Length = 456

 Score =  297 bits (761), Expect = 7e-79
 Identities = 146/185 (78%), Positives = 164/185 (88%)
 Frame = -3

Query: 557 SNEELFFGLTQVLRRFPKETDRVLCHFCFKPKKVTNEVLRVGDAKRSQVLISSIIXXXXX 378
           SNE+LFFGL+QVLR+FPKETDRVLCHFCFKPKKVT EVL V  A+++Q+LISSII     
Sbjct: 249 SNEQLFFGLSQVLRKFPKETDRVLCHFCFKPKKVTKEVLGVEYARKNQMLISSIILLKTA 308

Query: 377 XXXXXXLSKVLKDAKSFLLGNIYKSICENEKYASIRKRIGEVIDDDVLHARIPFVARTQQ 198
                 LSKVLKDAKSFLL N+YKS+C NE YASIRKRIGEVID+DVLHAR+PFVARTQQ
Sbjct: 309 LDALPLLSKVLKDAKSFLLANVYKSVCANETYASIRKRIGEVIDEDVLHARVPFVARTQQ 368

Query: 197 CFAVKAGIDGLLDAARRSFCDSSEAIHSLANTYREDFQLPNLKIPFNNRQGFYLSIPQKD 18
           CFAVKAGIDGLLD ARRSFCD+SEAIH+LAN YREDF+LPNLK+PFNNRQGFY +IPQKD
Sbjct: 369 CFAVKAGIDGLLDIARRSFCDTSEAIHNLANKYREDFKLPNLKLPFNNRQGFYFTIPQKD 428

Query: 17  IKGRL 3
           I+G+L
Sbjct: 429 IQGKL 433


>emb|CBI37367.3| unnamed protein product [Vitis vinifera]
          Length = 280

 Score =  297 bits (761), Expect = 7e-79
 Identities = 146/185 (78%), Positives = 164/185 (88%)
 Frame = -3

Query: 557 SNEELFFGLTQVLRRFPKETDRVLCHFCFKPKKVTNEVLRVGDAKRSQVLISSIIXXXXX 378
           SNE+LFFGL+QVLR+FPKETDRVLCHFCFKPKKVT EVL V  A+++Q+LISSII     
Sbjct: 73  SNEQLFFGLSQVLRKFPKETDRVLCHFCFKPKKVTKEVLGVEYARKNQMLISSIILLKTA 132

Query: 377 XXXXXXLSKVLKDAKSFLLGNIYKSICENEKYASIRKRIGEVIDDDVLHARIPFVARTQQ 198
                 LSKVLKDAKSFLL N+YKS+C NE YASIRKRIGEVID+DVLHAR+PFVARTQQ
Sbjct: 133 LDALPLLSKVLKDAKSFLLANVYKSVCANETYASIRKRIGEVIDEDVLHARVPFVARTQQ 192

Query: 197 CFAVKAGIDGLLDAARRSFCDSSEAIHSLANTYREDFQLPNLKIPFNNRQGFYLSIPQKD 18
           CFAVKAGIDGLLD ARRSFCD+SEAIH+LAN YREDF+LPNLK+PFNNRQGFY +IPQKD
Sbjct: 193 CFAVKAGIDGLLDIARRSFCDTSEAIHNLANKYREDFKLPNLKLPFNNRQGFYFTIPQKD 252

Query: 17  IKGRL 3
           I+G+L
Sbjct: 253 IQGKL 257


>emb|CAN68921.1| hypothetical protein VITISV_008586 [Vitis vinifera]
          Length = 530

 Score =  296 bits (759), Expect = 1e-78
 Identities = 146/185 (78%), Positives = 163/185 (88%)
 Frame = -3

Query: 557 SNEELFFGLTQVLRRFPKETDRVLCHFCFKPKKVTNEVLRVGDAKRSQVLISSIIXXXXX 378
           SNE+LFFGL+QVLR+FPKETDRVLCHFCFKPKKVT EVL V  A+++Q+LISSII     
Sbjct: 286 SNEQLFFGLSQVLRKFPKETDRVLCHFCFKPKKVTKEVLGVEYARKNQMLISSIILLKTA 345

Query: 377 XXXXXXLSKVLKDAKSFLLGNIYKSICENEKYASIRKRIGEVIDDDVLHARIPFVARTQQ 198
                 LSKVLKDAKSFLL N+YKS+C NE YASIRKRIGEVID+DVLHAR+PFVARTQQ
Sbjct: 346 LDALPLLSKVLKDAKSFLLANVYKSVCANETYASIRKRIGEVIDEDVLHARVPFVARTQQ 405

Query: 197 CFAVKAGIDGLLDAARRSFCDSSEAIHSLANTYREDFQLPNLKIPFNNRQGFYLSIPQKD 18
           CFAVKAGIDGLLD ARRSFCD+SEAIH+LAN YREDF+LPNLK+PFNNRQGFY  IPQKD
Sbjct: 406 CFAVKAGIDGLLDIARRSFCDTSEAIHNLANKYREDFKLPNLKLPFNNRQGFYFXIPQKD 465

Query: 17  IKGRL 3
           I+G+L
Sbjct: 466 IQGKL 470


>ref|XP_004169721.1| PREDICTED: DNA mismatch repair protein MSH4-like, partial [Cucumis
           sativus]
          Length = 770

 Score =  293 bits (749), Expect = 2e-77
 Identities = 143/185 (77%), Positives = 162/185 (87%)
 Frame = -3

Query: 557 SNEELFFGLTQVLRRFPKETDRVLCHFCFKPKKVTNEVLRVGDAKRSQVLISSIIXXXXX 378
           SNE+LFFGL+Q LR+FPKETDRVLCHFCFK KKVTNEVL   DAK+SQ LISSII     
Sbjct: 215 SNEQLFFGLSQALRKFPKETDRVLCHFCFKQKKVTNEVLHPSDAKKSQNLISSIILLKTA 274

Query: 377 XXXXXXLSKVLKDAKSFLLGNIYKSICENEKYASIRKRIGEVIDDDVLHARIPFVARTQQ 198
                 LSKVLK+AKSFLL NIYKSICENEKY +IRKRIGEVID+DVLHAR+PF+ARTQQ
Sbjct: 275 LEALPLLSKVLKEAKSFLLANIYKSICENEKYTNIRKRIGEVIDEDVLHARVPFIARTQQ 334

Query: 197 CFAVKAGIDGLLDAARRSFCDSSEAIHSLANTYREDFQLPNLKIPFNNRQGFYLSIPQKD 18
           CFAVKAGIDGLLD ARR+FCD+SEAIH+LAN YRE+++L NLK+PFNNRQGFYLSIP KD
Sbjct: 335 CFAVKAGIDGLLDIARRTFCDTSEAIHNLANKYREEYKLSNLKLPFNNRQGFYLSIPHKD 394

Query: 17  IKGRL 3
           ++G+L
Sbjct: 395 VQGKL 399


>ref|NP_193469.2| DNA mismatch repair protein MSH4 [Arabidopsis thaliana]
           gi|395406788|sp|F4JP48.1|MSH4_ARATH RecName: Full=DNA
           mismatch repair protein MSH4; Short=AtMSH4; AltName:
           Full=MutS protein homolog 4 gi|332658482|gb|AEE83882.1|
           DNA mismatch repair protein MSH4 [Arabidopsis thaliana]
          Length = 792

 Score =  279 bits (713), Expect = 2e-73
 Identities = 132/185 (71%), Positives = 159/185 (85%)
 Frame = -3

Query: 557 SNEELFFGLTQVLRRFPKETDRVLCHFCFKPKKVTNEVLRVGDAKRSQVLISSIIXXXXX 378
           SNE+LFFGL+QVLR+FPKETDRVLCHFCFKPKKVT  V+   + ++SQ +ISSII     
Sbjct: 237 SNEQLFFGLSQVLRKFPKETDRVLCHFCFKPKKVTEAVIGFENTRKSQNMISSIILLKTA 296

Query: 377 XXXXXXLSKVLKDAKSFLLGNIYKSICENEKYASIRKRIGEVIDDDVLHARIPFVARTQQ 198
                 L+KVLKDAK FLL N+YKS+CEN++YASIRK+IGEVIDDDVLHAR+PFVARTQQ
Sbjct: 297 LDALPILAKVLKDAKCFLLANVYKSVCENDRYASIRKKIGEVIDDDVLHARVPFVARTQQ 356

Query: 197 CFAVKAGIDGLLDAARRSFCDSSEAIHSLANTYREDFQLPNLKIPFNNRQGFYLSIPQKD 18
           CFA+KAGIDG LD ARR+FCD+SEAIH+LA+ YRE+F LPNLK+PFNNRQGF+  IPQK+
Sbjct: 357 CFALKAGIDGFLDIARRTFCDTSEAIHNLASKYREEFNLPNLKLPFNNRQGFFFRIPQKE 416

Query: 17  IKGRL 3
           ++G+L
Sbjct: 417 VQGKL 421