BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00023296
         (344 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EEE69144.1| hypothetical protein OsJ_28268 [Oryza sativa Japo...    90   2e-16
gb|EAZ07996.1| hypothetical protein OsI_30258 [Oryza sativa Indi...    90   2e-16
gb|AAM01179.2|AC113336_31 Putative retroelement [Oryza sativa Ja...    89   3e-16
gb|ABB46931.2| retrotransposon protein, putative, unclassified [...    89   3e-16
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam...    87   1e-15

>gb|EEE69144.1| hypothetical protein OsJ_28268 [Oryza sativa Japonica Group]
          Length = 1256

 Score = 89.7 bits (221), Expect = 2e-16
 Identities = 44/112 (39%), Positives = 65/112 (58%)
 Frame = -3

Query: 336 FFTDLFTTDRPVTDQSILNLFKPVITNRENDILGEVPSDEDIWRVVKKINPLKAPGPDGF 157
           +F  LFT D  +    + +L KP +T+  N+ L +  S+E+I   + +I PLKAPGPDGF
Sbjct: 471 YFQRLFTADPSIDHSRVTSLIKPKVTDAMNEELCKTVSEEEIANALFQIGPLKAPGPDGF 530

Query: 156 QGVFYQSCWDIVGPTINKTIKDFFIYNILPPDLNETFITLIPKIPCPDHISE 1
            G FYQ  W I+   I + +++FF    +P  +NET I LIPK   P  + +
Sbjct: 531 PGRFYQRNWAILKDDIVRAVQEFFSSGTMPSGVNETAIVLIPKTEQPQELKD 582


>gb|EAZ07996.1| hypothetical protein OsI_30258 [Oryza sativa Indica Group]
          Length = 633

 Score = 89.7 bits (221), Expect = 2e-16
 Identities = 44/112 (39%), Positives = 65/112 (58%)
 Frame = -3

Query: 336 FFTDLFTTDRPVTDQSILNLFKPVITNRENDILGEVPSDEDIWRVVKKINPLKAPGPDGF 157
           +F  LFT D  +    + +L KP +T+  N+ L +  S+E+I   + +I PLKAPGPDGF
Sbjct: 471 YFQRLFTADPSIDHSRVTSLIKPKVTDAMNEELCKTVSEEEIANALFQIGPLKAPGPDGF 530

Query: 156 QGVFYQSCWDIVGPTINKTIKDFFIYNILPPDLNETFITLIPKIPCPDHISE 1
            G FYQ  W I+   I + +++FF    +P  +NET I LIPK   P  + +
Sbjct: 531 PGRFYQRNWAILKDDIVRAVQEFFSSGTMPSGVNETAIVLIPKTEQPQELKD 582


>gb|AAM01179.2|AC113336_31 Putative retroelement [Oryza sativa Japonica Group]
          Length = 1888

 Score = 89.4 bits (220), Expect = 3e-16
 Identities = 44/112 (39%), Positives = 65/112 (58%)
 Frame = -3

Query: 336  FFTDLFTTDRPVTDQSILNLFKPVITNRENDILGEVPSDEDIWRVVKKINPLKAPGPDGF 157
            +F  LFT D  +    + +L KP +T+  N+ L +  S+E+I   + +I PLKAPGPDGF
Sbjct: 963  YFQRLFTADPSIDHSRVTSLMKPKVTDAMNEELCKTFSEEEIANALFQIGPLKAPGPDGF 1022

Query: 156  QGVFYQSCWDIVGPTINKTIKDFFIYNILPPDLNETFITLIPKIPCPDHISE 1
             G FYQ  W I+   I + +++FF    +P  +NET I LIPK   P  + +
Sbjct: 1023 PGRFYQRNWAILKDDIVRAVQEFFSLGTMPSGVNETAIVLIPKTEQPQELKD 1074


>gb|ABB46931.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1853

 Score = 89.4 bits (220), Expect = 3e-16
 Identities = 44/112 (39%), Positives = 65/112 (58%)
 Frame = -3

Query: 336  FFTDLFTTDRPVTDQSILNLFKPVITNRENDILGEVPSDEDIWRVVKKINPLKAPGPDGF 157
            +F  LFT D  +    + +L KP +T+  N+ L +  S+E+I   + +I PLKAPGPDGF
Sbjct: 928  YFQRLFTADPSIDHSRVTSLMKPKVTDAMNEELCKTFSEEEIANALFQIGPLKAPGPDGF 987

Query: 156  QGVFYQSCWDIVGPTINKTIKDFFIYNILPPDLNETFITLIPKIPCPDHISE 1
             G FYQ  W I+   I + +++FF    +P  +NET I LIPK   P  + +
Sbjct: 988  PGRFYQRNWAILKDDIVRAVQEFFSLGTMPSGVNETAIVLIPKTEQPQELKD 1039


>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
            42.57) [Arabidopsis thaliana]
          Length = 1662

 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 48/115 (41%), Positives = 72/115 (62%), Gaps = 3/115 (2%)
 Frame = -3

Query: 336  FFTDLFTTD-RPVTDQSILNL--FKPVITNRENDILGEVPSDEDIWRVVKKINPLKAPGP 166
            FFT ++ ++ RPV   SI++   FKP++T + ND L +  SD +I+  +  I   KAPGP
Sbjct: 774  FFTKVYESNGRPV---SIIDFAGFKPIVTEQINDDLTKDLSDLEIYNAICHIGDDKAPGP 830

Query: 165  DGFQGVFYQSCWDIVGPTINKTIKDFFIYNILPPDLNETFITLIPKIPCPDHISE 1
            DG    FY+SCW+IVGP + K +K FF  + +   +N T I +IPKI  P+ +S+
Sbjct: 831  DGLTARFYKSCWEIVGPDVIKEVKIFFRTSYMKQSINHTNICMIPKITNPETLSD 885