BLASTX nr result
ID: Coptis23_contig00023294
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00023294
(1566 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI32617.3| unnamed protein product [Vitis vinifera] 672 0.0
ref|XP_002274790.1| PREDICTED: DNA topoisomerase 6 subunit A-lik... 672 0.0
ref|XP_004142105.1| PREDICTED: DNA topoisomerase 6 subunit A-lik... 671 0.0
ref|XP_003542493.1| PREDICTED: DNA topoisomerase 6 subunit A-lik... 662 0.0
ref|XP_003537243.1| PREDICTED: DNA topoisomerase 6 subunit A-lik... 661 0.0
>emb|CBI32617.3| unnamed protein product [Vitis vinifera]
Length = 471
Score = 672 bits (1733), Expect = 0.0
Identities = 343/425 (80%), Positives = 366/425 (86%)
Frame = -2
Query: 1538 MADKKKKRSRAGDPISDDEEIQSIIPFKKRLKPDPEXXXXXXXXXXXXXXXXXXXXXXXX 1359
MADKKK+R DP D Q +PF+ LK D
Sbjct: 44 MADKKKRRRT--DPSDSD---QQHLPFRNSLKSDEIILQTLKDLCSSSSSDGATGTLTLS 98
Query: 1358 XLGLSSTCREVTDLDLSSVQQEIEKIVFQITKQILSGSGFSFEVPTRGSANQLYVPELDR 1179
LGL+STCREV DL LSSVQ IE ++ ++T ILSG GFSF VP+R SANQLYVPELDR
Sbjct: 99 DLGLASTCREVADLSLSSVQSTIETLILRLTHSILSGQGFSFSVPSRSSANQLYVPELDR 158
Query: 1178 IVLKSKNSTRPYANVSTVRKTAVTTRILQLVHQLCTKSIHVTKRDLFYTDVKLFQDQSQS 999
IVLK K+S RP+ANVSTVRK+AVTTRILQL+HQLCTK+IHVTKRDLFYTDVKLFQDQ+QS
Sbjct: 159 IVLKDKSSLRPFANVSTVRKSAVTTRILQLIHQLCTKNIHVTKRDLFYTDVKLFQDQTQS 218
Query: 998 DAVLDDVSCMLGCTRSSLNVIASEKGVVVGRLIFSDNGDIIDCTKMGMGGKAIPPNIDRV 819
D+VLDDVSCMLGCTRSSLNVIASEKGVVVGRLIFSDNGD+IDCTKMGMGGKAIPPNIDRV
Sbjct: 219 DSVLDDVSCMLGCTRSSLNVIASEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRV 278
Query: 818 GDMQSDALFILLVEKDAAYMRLAEDRFYNRFPCIIITAKGQPDVATRLFLRKMKLELKLP 639
GDMQSDALFILLVEKDAAY+RLAEDRFYNRFPCII+TAKGQPDVATRLFLRKMK ELKLP
Sbjct: 279 GDMQSDALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKTELKLP 338
Query: 638 VLALVDSDPYGLKILSVYGCGSKNMSYDSGNLTTPDIKWLGVRPSDLDKYKIPEQCRLPM 459
VLALVDSDPYGLKILSVYGCGSKNMSYDS NLTTPDIKWLG+RPSDLDKY IPEQCRLPM
Sbjct: 339 VLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYSIPEQCRLPM 398
Query: 458 TEQDIKTGKDMLEEDFVKKNPEWVEELSLMVKTKQKAEIQALSTFGFQYLSEVYLPLKLQ 279
TEQDIKTGKD+LEEDFVKKNP WVEEL+LMVKTKQKAEIQALS+FGFQYLSEVYLPLKLQ
Sbjct: 399 TEQDIKTGKDLLEEDFVKKNPGWVEELNLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQ 458
Query: 278 QQDWL 264
QQDWL
Sbjct: 459 QQDWL 463
>ref|XP_002274790.1| PREDICTED: DNA topoisomerase 6 subunit A-like [Vitis vinifera]
Length = 420
Score = 672 bits (1733), Expect = 0.0
Identities = 343/425 (80%), Positives = 366/425 (86%)
Frame = -2
Query: 1538 MADKKKKRSRAGDPISDDEEIQSIIPFKKRLKPDPEXXXXXXXXXXXXXXXXXXXXXXXX 1359
MADKKK+R DP D Q +PF+ LK D
Sbjct: 1 MADKKKRRRT--DPSDSD---QQHLPFRNSLKSDEIILQTLKDLCSSSSSDGATGTLTLS 55
Query: 1358 XLGLSSTCREVTDLDLSSVQQEIEKIVFQITKQILSGSGFSFEVPTRGSANQLYVPELDR 1179
LGL+STCREV DL LSSVQ IE ++ ++T ILSG GFSF VP+R SANQLYVPELDR
Sbjct: 56 DLGLASTCREVADLSLSSVQSTIETLILRLTHSILSGQGFSFSVPSRSSANQLYVPELDR 115
Query: 1178 IVLKSKNSTRPYANVSTVRKTAVTTRILQLVHQLCTKSIHVTKRDLFYTDVKLFQDQSQS 999
IVLK K+S RP+ANVSTVRK+AVTTRILQL+HQLCTK+IHVTKRDLFYTDVKLFQDQ+QS
Sbjct: 116 IVLKDKSSLRPFANVSTVRKSAVTTRILQLIHQLCTKNIHVTKRDLFYTDVKLFQDQTQS 175
Query: 998 DAVLDDVSCMLGCTRSSLNVIASEKGVVVGRLIFSDNGDIIDCTKMGMGGKAIPPNIDRV 819
D+VLDDVSCMLGCTRSSLNVIASEKGVVVGRLIFSDNGD+IDCTKMGMGGKAIPPNIDRV
Sbjct: 176 DSVLDDVSCMLGCTRSSLNVIASEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRV 235
Query: 818 GDMQSDALFILLVEKDAAYMRLAEDRFYNRFPCIIITAKGQPDVATRLFLRKMKLELKLP 639
GDMQSDALFILLVEKDAAY+RLAEDRFYNRFPCII+TAKGQPDVATRLFLRKMK ELKLP
Sbjct: 236 GDMQSDALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKTELKLP 295
Query: 638 VLALVDSDPYGLKILSVYGCGSKNMSYDSGNLTTPDIKWLGVRPSDLDKYKIPEQCRLPM 459
VLALVDSDPYGLKILSVYGCGSKNMSYDS NLTTPDIKWLG+RPSDLDKY IPEQCRLPM
Sbjct: 296 VLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYSIPEQCRLPM 355
Query: 458 TEQDIKTGKDMLEEDFVKKNPEWVEELSLMVKTKQKAEIQALSTFGFQYLSEVYLPLKLQ 279
TEQDIKTGKD+LEEDFVKKNP WVEEL+LMVKTKQKAEIQALS+FGFQYLSEVYLPLKLQ
Sbjct: 356 TEQDIKTGKDLLEEDFVKKNPGWVEELNLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQ 415
Query: 278 QQDWL 264
QQDWL
Sbjct: 416 QQDWL 420
>ref|XP_004142105.1| PREDICTED: DNA topoisomerase 6 subunit A-like [Cucumis sativus]
gi|449521501|ref|XP_004167768.1| PREDICTED: DNA
topoisomerase 6 subunit A-like [Cucumis sativus]
Length = 420
Score = 671 bits (1731), Expect = 0.0
Identities = 337/425 (79%), Positives = 371/425 (87%)
Frame = -2
Query: 1538 MADKKKKRSRAGDPISDDEEIQSIIPFKKRLKPDPEXXXXXXXXXXXXXXXXXXXXXXXX 1359
MADK+K+R ++ ++E Q +PFK +LKPD
Sbjct: 1 MADKRKRRR---SELNSEDEAQ--LPFKNKLKPDSFILQILKELSDASTASSSSSSKTLD 55
Query: 1358 XLGLSSTCREVTDLDLSSVQQEIEKIVFQITKQILSGSGFSFEVPTRGSANQLYVPELDR 1179
LGLSS+CREVTDL LSSVQ IE ++ +I + ILSG+GF+F+VP+R ANQLYVPELDR
Sbjct: 56 DLGLSSSCREVTDLSLSSVQATIESVILKIARSILSGNGFAFDVPSRSGANQLYVPELDR 115
Query: 1178 IVLKSKNSTRPYANVSTVRKTAVTTRILQLVHQLCTKSIHVTKRDLFYTDVKLFQDQSQS 999
IVLK K + RPYAN+STVRK+ +TTRILQLVHQLC K+IHVTKRDLFYTDVKLFQDQ+QS
Sbjct: 116 IVLKDKTALRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQS 175
Query: 998 DAVLDDVSCMLGCTRSSLNVIASEKGVVVGRLIFSDNGDIIDCTKMGMGGKAIPPNIDRV 819
D+VLDDVSC+LGCTRSSLNVIA+EKGVVVGRLIFSDNGD+IDCTKMGMGGKAIPPNIDRV
Sbjct: 176 DSVLDDVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRV 235
Query: 818 GDMQSDALFILLVEKDAAYMRLAEDRFYNRFPCIIITAKGQPDVATRLFLRKMKLELKLP 639
GDMQSDALFILLVEKDAAY+RLAEDRFYNRFPCII+TAKGQPDVATRLFLRKMK+ELKLP
Sbjct: 236 GDMQSDALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLP 295
Query: 638 VLALVDSDPYGLKILSVYGCGSKNMSYDSGNLTTPDIKWLGVRPSDLDKYKIPEQCRLPM 459
VLALVDSDPYGLKILSVYGCGSKNMSYDS NLTTPDIKWLG+RPSDLDKYKIPEQCRLPM
Sbjct: 296 VLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPM 355
Query: 458 TEQDIKTGKDMLEEDFVKKNPEWVEELSLMVKTKQKAEIQALSTFGFQYLSEVYLPLKLQ 279
TEQDIKTGKD+LEEDFVKKNP WVEELSLMVKTKQKAEIQALS+FGFQYLSEVYLPLKLQ
Sbjct: 356 TEQDIKTGKDLLEEDFVKKNPGWVEELSLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQ 415
Query: 278 QQDWL 264
Q+DWL
Sbjct: 416 QKDWL 420
>ref|XP_003542493.1| PREDICTED: DNA topoisomerase 6 subunit A-like [Glycine max]
Length = 417
Score = 662 bits (1709), Expect = 0.0
Identities = 335/425 (78%), Positives = 361/425 (84%)
Frame = -2
Query: 1538 MADKKKKRSRAGDPISDDEEIQSIIPFKKRLKPDPEXXXXXXXXXXXXXXXXXXXXXXXX 1359
MAD KK+R + DP D+ +PFK +LKPD
Sbjct: 1 MADNKKRRRK--DPAGDE------LPFKNKLKPDSAIMETLKQFSASSSSSSVSQTLTLQ 52
Query: 1358 XLGLSSTCREVTDLDLSSVQQEIEKIVFQITKQILSGSGFSFEVPTRGSANQLYVPELDR 1179
L + CREV DL LSSVQ IE ++ +I ILSG GFSF+VP+R +ANQLYVPELDR
Sbjct: 53 DLSIPFRCREVADLSLSSVQSNIESLILRIAHSILSGHGFSFDVPSRSAANQLYVPELDR 112
Query: 1178 IVLKSKNSTRPYANVSTVRKTAVTTRILQLVHQLCTKSIHVTKRDLFYTDVKLFQDQSQS 999
IVLK K+S RP+AN+STVRK+A+T RILQL+HQLC K IHVTKRDLFYTDVKLFQDQ QS
Sbjct: 113 IVLKDKSSLRPFANISTVRKSAITARILQLIHQLCIKGIHVTKRDLFYTDVKLFQDQIQS 172
Query: 998 DAVLDDVSCMLGCTRSSLNVIASEKGVVVGRLIFSDNGDIIDCTKMGMGGKAIPPNIDRV 819
DAVLDDVSCMLGCTRSSLNV+A+EKGVVVGRLIFSDNGD+IDCTKMGMGGKAIPPNIDRV
Sbjct: 173 DAVLDDVSCMLGCTRSSLNVVAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRV 232
Query: 818 GDMQSDALFILLVEKDAAYMRLAEDRFYNRFPCIIITAKGQPDVATRLFLRKMKLELKLP 639
GDMQSDALFILLVEKDAAYMRLAEDRFYNRFPCII+TAKGQPDV+TRLFLRKMK ELKLP
Sbjct: 233 GDMQSDALFILLVEKDAAYMRLAEDRFYNRFPCIIVTAKGQPDVSTRLFLRKMKTELKLP 292
Query: 638 VLALVDSDPYGLKILSVYGCGSKNMSYDSGNLTTPDIKWLGVRPSDLDKYKIPEQCRLPM 459
VLALVDSDPYGLKILSVYGCGSKNMSYDS NLTTPDIKWLGVRPSDLDKYKIPEQCRLPM
Sbjct: 293 VLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGVRPSDLDKYKIPEQCRLPM 352
Query: 458 TEQDIKTGKDMLEEDFVKKNPEWVEELSLMVKTKQKAEIQALSTFGFQYLSEVYLPLKLQ 279
TEQDIKTGKD+LEEDFVKKNP WVEEL+LMVKTKQKAEIQALSTFGFQYLSEVYLPLKLQ
Sbjct: 353 TEQDIKTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSTFGFQYLSEVYLPLKLQ 412
Query: 278 QQDWL 264
Q+DWL
Sbjct: 413 QKDWL 417
>ref|XP_003537243.1| PREDICTED: DNA topoisomerase 6 subunit A-like [Glycine max]
Length = 419
Score = 661 bits (1705), Expect = 0.0
Identities = 336/427 (78%), Positives = 362/427 (84%), Gaps = 2/427 (0%)
Frame = -2
Query: 1538 MADKKKKRSRAGDPISDDEEIQSIIPFKKRLKPDPEXXXXXXXXXXXXXXXXXXXXXXXX 1359
MAD KK+R + DP D+ +PFK +LKPD
Sbjct: 1 MADNKKRRRK--DPAGDE------LPFKNKLKPDSAIMETLKQFSASSSSSSASVSQTLT 52
Query: 1358 XLGLSST--CREVTDLDLSSVQQEIEKIVFQITKQILSGSGFSFEVPTRGSANQLYVPEL 1185
LS CREV DL LSSVQ IE ++ +I ILSG GFSF+VP+R +ANQLYVPEL
Sbjct: 53 LQDLSLPFRCREVADLSLSSVQSNIESLILRIAHSILSGHGFSFDVPSRSAANQLYVPEL 112
Query: 1184 DRIVLKSKNSTRPYANVSTVRKTAVTTRILQLVHQLCTKSIHVTKRDLFYTDVKLFQDQS 1005
DRIVLK K+S RP+AN+STVRK+A+T RILQL+HQLC K IHVTKRDLFYTDVKLFQDQ
Sbjct: 113 DRIVLKDKSSLRPFANISTVRKSAITARILQLIHQLCLKGIHVTKRDLFYTDVKLFQDQI 172
Query: 1004 QSDAVLDDVSCMLGCTRSSLNVIASEKGVVVGRLIFSDNGDIIDCTKMGMGGKAIPPNID 825
QSDAVLDDVSCMLGCTRSSLNV+A+EKGVVVGRLIFSDNGD+IDCTKMGMGGKAIPPNID
Sbjct: 173 QSDAVLDDVSCMLGCTRSSLNVVAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNID 232
Query: 824 RVGDMQSDALFILLVEKDAAYMRLAEDRFYNRFPCIIITAKGQPDVATRLFLRKMKLELK 645
RVGDMQSDALFILLVEKDAAYMRLAEDRFYNRFPCII+TAKGQPDV+TRLFLRKMK+ELK
Sbjct: 233 RVGDMQSDALFILLVEKDAAYMRLAEDRFYNRFPCIIVTAKGQPDVSTRLFLRKMKIELK 292
Query: 644 LPVLALVDSDPYGLKILSVYGCGSKNMSYDSGNLTTPDIKWLGVRPSDLDKYKIPEQCRL 465
LPVLALVDSDPYGLKILSVYGCGSKNMSYDS NLTTPDIKWLGVRPSDLDKYKIPEQCRL
Sbjct: 293 LPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGVRPSDLDKYKIPEQCRL 352
Query: 464 PMTEQDIKTGKDMLEEDFVKKNPEWVEELSLMVKTKQKAEIQALSTFGFQYLSEVYLPLK 285
PMTEQDIKTGKD+LEEDFVKKNP WVEEL+LMVKTKQKAEIQALSTFGFQYLSEVYLPLK
Sbjct: 353 PMTEQDIKTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSTFGFQYLSEVYLPLK 412
Query: 284 LQQQDWL 264
LQQ+DWL
Sbjct: 413 LQQKDWL 419