BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00023271
         (877 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN76956.1| hypothetical protein VITISV_022305 [Vitis vinifera]   189   4e-66
gb|AAL67590.1|AC018929_12 putative polyprotein [Oryza sativa Jap...   187   6e-61
gb|ABF96902.1| retrotransposon protein, putative, Ty1-copia subc...   186   2e-59
gb|AAT85780.1| zinc knuckle domain containing protein [Oryza sat...   186   2e-59
emb|CAE01490.1| P0041A24.2 [Oryza sativa Japonica Group]              182   4e-58

>emb|CAN76956.1| hypothetical protein VITISV_022305 [Vitis vinifera]
          Length = 973

 Score =  189 bits (480), Expect(2) = 4e-66
 Identities = 90/141 (63%), Positives = 110/141 (78%)
 Frame = -3

Query: 617  YVFLSGNAVICWHSTKQTLVATSSDHSEILALHEASRECVWLRLLIGHIRSSCQLPSITG 438
            YVF      I W   KQT+V TSS+HSEILA+HEAS EC+  R +I HIR SC L SI G
Sbjct: 819  YVFNCNGTAISWRYVKQTMVXTSSNHSEILAIHEASXECIXXRSMIQHIRESCGLSSIKG 878

Query: 437  VPSIIYEDNAACIAQIQEGFIKGDRTKHIAPKFFYTHQLQKKKQIKVEQVRSSDNLADLF 258
             P+I++EDN ACIAQI  G+IKGDRTKHI+PKFFYTH+LQK  +I V+Q+RSSDN+A LF
Sbjct: 879  DPTILFEDNVACIAQITXGYIKGDRTKHISPKFFYTHELQKSGEIDVQQIRSSDNJAXLF 938

Query: 257  TKSLPKHTFQKLVYGIGMRRV 195
            TKSLP  TF+KL++ IGMR++
Sbjct: 939  TKSLPTSTFKKLIHKIGMRQL 959



 Score = 89.4 bits (220), Expect(2) = 4e-66
 Identities = 48/88 (54%), Positives = 55/88 (62%)
 Frame = -1

Query: 871 LVYLCI*HNTCTRSYIAFSISFLSRYNCAHTLRHWNDVKHILRYFYGITGMKLFYSYGST 692
           L+YL      CTR  IAFS++ L+RYN   T RHWN +KHILRY  G T M LFYS  S 
Sbjct: 740 LMYLA----NCTRPDIAFSVNLLARYNSXPTRRHWNGIKHILRYLRGTTDMGLFYSRESK 795

Query: 691 NDYDLVGYAVFGYLSDPQKGHSQTGMYF 608
               L+GYA  GYLS+P K  SQTG  F
Sbjct: 796 Q--QLLGYADVGYLSBPHKDRSQTGYVF 821


>gb|AAL67590.1|AC018929_12 putative polyprotein [Oryza sativa Japonica Group]
           gi|31433666|gb|AAP55150.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 419

 Score =  187 bits (474), Expect(2) = 6e-61
 Identities = 90/141 (63%), Positives = 113/141 (80%)
 Frame = -3

Query: 617 YVFLSGNAVICWHSTKQTLVATSSDHSEILALHEASRECVWLRLLIGHIRSSCQLPSITG 438
           +VFL G   I W S+KQTLVATS++HSEI+AL+EA+REC WLR +  HI  SC L SI+ 
Sbjct: 265 FVFLCGGTAISWRSSKQTLVATSTNHSEIIALYEATRECAWLRRMTHHIERSCGL-SISN 323

Query: 437 VPSIIYEDNAACIAQIQEGFIKGDRTKHIAPKFFYTHQLQKKKQIKVEQVRSSDNLADLF 258
            P+IIYEDNAAC+AQ+Q G++K + TKHIAPKFFY+H+LQK+ ++K+ Q +S DNLADLF
Sbjct: 324 APTIIYEDNAACVAQMQLGYVKNNMTKHIAPKFFYSHELQKQGEVKILQSKSCDNLADLF 383

Query: 257 TKSLPKHTFQKLVYGIGMRRV 195
           TKSLP  TFQK V  IGMRR+
Sbjct: 384 TKSLPACTFQKFVRDIGMRRL 404



 Score = 74.3 bits (181), Expect(2) = 6e-61
 Identities = 41/89 (46%), Positives = 51/89 (57%)
 Frame = -1

Query: 871 LVYLCI*HNTCTRSYIAFSISFLSRYNCAHTLRHWNDVKHILRYFYGITGMKLFYSYGST 692
           L+YL      CTR  IAF ++ L+RY+ + T RHW  VK +LRY  G   + LF+     
Sbjct: 186 LMYLA----NCTRPDIAFVVNLLARYSVSPTRRHWVGVKTVLRYLQGTQDLGLFFP--RQ 239

Query: 691 NDYDLVGYAVFGYLSDPQKGHSQTGMYFL 605
            D  +VGYA  GYLSDP    SQTG  FL
Sbjct: 240 RDLTMVGYADAGYLSDPHNARSQTGFVFL 268


>gb|ABF96902.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1370

 Score =  186 bits (473), Expect(2) = 2e-59
 Identities = 89/141 (63%), Positives = 111/141 (78%)
 Frame = -3

Query: 617  YVFLSGNAVICWHSTKQTLVATSSDHSEILALHEASRECVWLRLLIGHIRSSCQLPSITG 438
            ++FL GN  I W S KQTLVATS++HSEI+AL+EA+RECVWLR +IGHI+ SC L +I  
Sbjct: 1218 FIFLCGNTAISWRSVKQTLVATSTNHSEIIALYEATRECVWLRRMIGHIQKSCGL-NIDN 1276

Query: 437  VPSIIYEDNAACIAQIQEGFIKGDRTKHIAPKFFYTHQLQKKKQIKVEQVRSSDNLADLF 258
             P+IIYEDNAAC+AQI  G++K + TKHI PKFFY H+LQK  +I V Q +S +NLADLF
Sbjct: 1277 TPTIIYEDNAACVAQIHMGYVKSNFTKHIVPKFFYPHELQKSGEINVLQTKSCENLADLF 1336

Query: 257  TKSLPKHTFQKLVYGIGMRRV 195
            TKSLP  +F + V GIGMRR+
Sbjct: 1337 TKSLPASSFHRCVRGIGMRRL 1357



 Score = 69.7 bits (169), Expect(2) = 2e-59
 Identities = 36/79 (45%), Positives = 46/79 (58%)
 Frame = -1

Query: 841  CTRSYIAFSISFLSRYNCAHTLRHWNDVKHILRYFYGITGMKLFYSYGSTNDYDLVGYAV 662
            CTR  IAF+++ L+RY+   T RHW  VK ILRY  G   + L++      D  +VGY  
Sbjct: 1145 CTRPDIAFALNLLARYSATPTRRHWVGVKTILRYLRGTQDLGLWFP--KNQDPSMVGYVD 1202

Query: 661  FGYLSDPQKGHSQTGMYFL 605
             GY+SDP    SQTG  FL
Sbjct: 1203 AGYMSDPHNAISQTGFIFL 1221


>gb|AAT85780.1| zinc knuckle domain containing protein [Oryza sativa Japonica Group]
          Length = 1329

 Score =  186 bits (473), Expect(2) = 2e-59
 Identities = 89/141 (63%), Positives = 111/141 (78%)
 Frame = -3

Query: 617  YVFLSGNAVICWHSTKQTLVATSSDHSEILALHEASRECVWLRLLIGHIRSSCQLPSITG 438
            ++FL GN  I W S KQTLVATS++HSEI+AL+EA+RECVWLR +IGHI+ SC L +I  
Sbjct: 1177 FIFLCGNTAISWRSVKQTLVATSTNHSEIIALYEATRECVWLRRMIGHIQKSCGL-NIDN 1235

Query: 437  VPSIIYEDNAACIAQIQEGFIKGDRTKHIAPKFFYTHQLQKKKQIKVEQVRSSDNLADLF 258
             P+IIYEDNAAC+AQI  G++K + TKHI PKFFY H+LQK  +I V Q +S +NLADLF
Sbjct: 1236 TPTIIYEDNAACVAQIHMGYVKSNFTKHIVPKFFYPHELQKSGEINVLQTKSCENLADLF 1295

Query: 257  TKSLPKHTFQKLVYGIGMRRV 195
            TKSLP  +F + V GIGMRR+
Sbjct: 1296 TKSLPASSFHRCVRGIGMRRL 1316



 Score = 69.7 bits (169), Expect(2) = 2e-59
 Identities = 36/79 (45%), Positives = 46/79 (58%)
 Frame = -1

Query: 841  CTRSYIAFSISFLSRYNCAHTLRHWNDVKHILRYFYGITGMKLFYSYGSTNDYDLVGYAV 662
            CTR  IAF+++ L+RY+   T RHW  VK ILRY  G   + L++      D  +VGY  
Sbjct: 1104 CTRPDIAFALNLLARYSATPTRRHWVGVKTILRYLRGTQDLGLWFP--KNQDPSMVGYVD 1161

Query: 661  FGYLSDPQKGHSQTGMYFL 605
             GY+SDP    SQTG  FL
Sbjct: 1162 AGYMSDPHNAISQTGFIFL 1180


>emb|CAE01490.1| P0041A24.2 [Oryza sativa Japonica Group]
          Length = 1376

 Score =  182 bits (462), Expect(2) = 4e-58
 Identities = 89/139 (64%), Positives = 109/139 (78%)
 Frame = -3

Query: 617  YVFLSGNAVICWHSTKQTLVATSSDHSEILALHEASRECVWLRLLIGHIRSSCQLPSITG 438
            +VFL GN  I W S KQTLVATS++HSEI+AL+EA+RECVWLR +IGHI+ SC L +I  
Sbjct: 1226 FVFLCGNTAISWWSVKQTLVATSTNHSEIIALYEATRECVWLRRMIGHIQKSCGL-NIDN 1284

Query: 437  VPSIIYEDNAACIAQIQEGFIKGDRTKHIAPKFFYTHQLQKKKQIKVEQVRSSDNLADLF 258
             P+IIYEDNAAC+AQI  G++K + TKHIAPKFFY H+LQK  +I V Q +S +NLADLF
Sbjct: 1285 TPTIIYEDNAACVAQIHMGYVKRNFTKHIAPKFFYPHELQKSGEINVLQTKSCENLADLF 1344

Query: 257  TKSLPKHTFQKLVYGIGMR 201
             KSLP  +F + V GIGMR
Sbjct: 1345 MKSLPASSFHRCVRGIGMR 1363



 Score = 69.7 bits (169), Expect(2) = 4e-58
 Identities = 39/89 (43%), Positives = 50/89 (56%)
 Frame = -1

Query: 871  LVYLCI*HNTCTRSYIAFSISFLSRYNCAHTLRHWNDVKHILRYFYGITGMKLFYSYGST 692
            L+YL      CTR  IAF+++ L+RY+ A T RHW  VK ILRY  G   + L++     
Sbjct: 1147 LMYLA----NCTRPDIAFAVNLLARYSAAPTRRHWVGVKTILRYLRGTQDLGLWFP--KN 1200

Query: 691  NDYDLVGYAVFGYLSDPQKGHSQTGMYFL 605
             D  +VGY   GY+S P    SQTG  FL
Sbjct: 1201 QDPSMVGYVDAGYMSVPHNARSQTGFVFL 1229