BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00023216
         (1275 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD28730.1| Ribonuclease H [Medicago truncatula]                    67   1e-08
ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medica...    61   7e-07
gb|ABN08796.1| Ribonuclease H [Medicago truncatula]                    61   7e-07

>gb|ABD28730.1| Ribonuclease H [Medicago truncatula]
          Length = 409

 Score = 67.0 bits (162), Expect = 1e-08
 Identities = 36/107 (33%), Positives = 59/107 (55%), Gaps = 4/107 (3%)
 Frame = -3

Query: 574 KQVIWIPPDRDTIKVNCNCSSLENTGSGGLGLIFRDE---FLKEFILKVWA*SQLTSYEV 404
           +++IW+PP    +K+NC+ S + +   G +G+IFR     F   F   +      T+ E 
Sbjct: 241 REIIWVPPHGGCMKINCDGSVVGSPSCGSIGVIFRASQTMFCGAFAQNI---GYATALEA 297

Query: 403 ECNAVVRAVELTLTRNLLNIWLETDSKSVAQAFN-NDAIVWNLKPRW 266
           E +A + A+E     +L NIW+ETDS +V +AF+ N  + W +  RW
Sbjct: 298 EYSACMFAIEKAKELHLTNIWIETDSVNVIRAFHFNTGVPWKMHIRW 344


>ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medicago truncatula]
           gi|355496705|gb|AES77908.1| Cytochrome c biogenesis
           protein ccsA [Medicago truncatula]
          Length = 666

 Score = 60.8 bits (146), Expect = 7e-07
 Identities = 38/118 (32%), Positives = 56/118 (47%), Gaps = 4/118 (3%)
 Frame = -3

Query: 607 IECRPKPTTTIKQVIWIPPDRDTIKVNCNCSSLENTGSGGLGLIFRD---EFLKEFILKV 437
           I  + K  T    +IW PP  D +K+NC+ SS+     G +G++ RD    FL      +
Sbjct: 201 IPFKVKRVTPHLDIIWKPPIGDIVKINCDGSSVGRHPCGSIGIVIRDSNHHFLGAISSNI 260

Query: 436 WA*SQLTSYEVECNAVVRAVELTLTRNLLNIWLETDSKSVAQAFNND-AIVWNLKPRW 266
                 T  E E  A + A+E      L+++ LETDS  V  AFN    + W ++ RW
Sbjct: 261 ---GNATPLEAEFCAGMMAMEKAQEMQLMHVCLETDSLKVVNAFNKGLGVPWQMRARW 315


>gb|ABN08796.1| Ribonuclease H [Medicago truncatula]
          Length = 221

 Score = 60.8 bits (146), Expect = 7e-07
 Identities = 38/118 (32%), Positives = 56/118 (47%), Gaps = 4/118 (3%)
 Frame = -3

Query: 607 IECRPKPTTTIKQVIWIPPDRDTIKVNCNCSSLENTGSGGLGLIFRD---EFLKEFILKV 437
           I  + K  T    +IW PP  D +K+NC+ SS+     G +G++ RD    FL      +
Sbjct: 38  IPFKVKRVTPHLDIIWKPPIGDIVKINCDGSSVGRHPCGSIGIVIRDSNHHFLGAISSNI 97

Query: 436 WA*SQLTSYEVECNAVVRAVELTLTRNLLNIWLETDSKSVAQAFNND-AIVWNLKPRW 266
                 T  E E  A + A+E      L+++ LETDS  V  AFN    + W ++ RW
Sbjct: 98  ---GNATPLEAEFCAGMMAMEKAQEMQLMHVCLETDSLKVVNAFNKGLGVPWQMRARW 152