BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00023152
         (1237 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD28730.1| Ribonuclease H [Medicago truncatula]                    59   7e-07
ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medica...    59   3e-06

>gb|ABD28730.1| Ribonuclease H [Medicago truncatula]
          Length = 409

 Score = 58.9 bits (141), Expect(2) = 7e-07
 Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
 Frame = +2

Query: 329 WKFMHSCAATNAKLQSRGMRNASVCCMRFNNNGEL-QHILWNCEFARRLWSWSFGKIRLR 505
           W+F+H+   T+  L+ RG    S+CC       E   HI   C    +LW W        
Sbjct: 89  WRFLHNKLPTDDNLRKRGCYIVSICCCFCRKQAETSSHIFLQCPVTLQLWDWLLKATDQH 148

Query: 506 YDFHSIQTAIDKAKGSSTVIKHMWGAAIVGGMVSLWLHRNKVYFE 640
            DF SI          S +++H+  +AIV  M S+WL  N  YF+
Sbjct: 149 LDFSSILNI-------SRMVQHVMNSAIVHIMWSIWLECNNKYFD 186



 Score = 21.6 bits (44), Expect(2) = 7e-07
 Identities = 5/14 (35%), Positives = 9/14 (64%)
 Frame = +3

Query: 273 IGWHRVIWNGYVHP 314
           + W +++WN Y  P
Sbjct: 69  VHWAKMLWNAYTPP 82


>ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medicago truncatula]
           gi|355496705|gb|AES77908.1| Cytochrome c biogenesis
           protein ccsA [Medicago truncatula]
          Length = 666

 Score = 58.9 bits (141), Expect = 3e-06
 Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 3/137 (2%)
 Frame = +2

Query: 242 AYEELRETEQN--WMA*SYLEWLCAPKDATAWKFMHSCAATNAKLQSRGMRNASVCCMRF 415
           AY+ + ET  +  W    +  ++   +    W+ +H+   T+  L+ RG    S+CC   
Sbjct: 23  AYKFINETGNHVLWDKFLWNSYIPPSRSFITWRLLHNKLPTDENLRKRGCLIVSICCFCM 82

Query: 416 NNNGELQHILWNCEFARRLWSW-SFGKIRLRYDFHSIQTAIDKAKGSSTVIKHMWGAAIV 592
            +    QHI + C    RLW W   G  +L      +Q  I      S ++ ++  +AI+
Sbjct: 83  KSAESSQHIFFECHVTSRLWDWLGKGTDKLLDCSSCLQLLIRNWGSGSKLVNNILNSAII 142

Query: 593 GGMVSLWLHRNKVYFED 643
             + S+W+ RN+  F +
Sbjct: 143 HTIWSIWIERNQRCFHN 159