BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00023056
         (308 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containi...   127   9e-28
emb|CBI15839.3| unnamed protein product [Vitis vinifera]              127   9e-28
ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containi...    97   2e-18
ref|XP_002301860.1| predicted protein [Populus trichocarpa] gi|2...    96   3e-18
ref|NP_172105.4| uncharacterized basic helix-loop-helix protein ...    95   5e-18

>ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  127 bits (319), Expect = 9e-28
 Identities = 58/78 (74%), Positives = 68/78 (87%)
 Frame = +1

Query: 73  MFCKCGSIEAALSVFHGLSVKNIFCWNSIILGLGSFGYGEEAMTAFADMKKDGIKPDGVT 252
           M+CKCG++EAA+ VFHGLS KNIFCWNSII+GLG  G GEEA+ AF  M+K+GIKPDGVT
Sbjct: 249 MYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVT 308

Query: 253 FVGLLSGCSHSGLTSEGR 306
           FVG+LSGCSHSGL S G+
Sbjct: 309 FVGILSGCSHSGLLSAGQ 326


>emb|CBI15839.3| unnamed protein product [Vitis vinifera]
          Length = 505

 Score =  127 bits (319), Expect = 9e-28
 Identities = 58/78 (74%), Positives = 68/78 (87%)
 Frame = +1

Query: 73  MFCKCGSIEAALSVFHGLSVKNIFCWNSIILGLGSFGYGEEAMTAFADMKKDGIKPDGVT 252
           M+CKCG++EAA+ VFHGLS KNIFCWNSII+GLG  G GEEA+ AF  M+K+GIKPDGVT
Sbjct: 177 MYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVT 236

Query: 253 FVGLLSGCSHSGLTSEGR 306
           FVG+LSGCSHSGL S G+
Sbjct: 237 FVGILSGCSHSGLLSAGQ 254


>ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Vitis vinifera]
          Length = 464

 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 42/78 (53%), Positives = 57/78 (73%)
 Frame = +1

Query: 73  MFCKCGSIEAALSVFHGLSVKNIFCWNSIILGLGSFGYGEEAMTAFADMKKDGIKPDGVT 252
           M+ KCGS++ +L VF  L  KN+FCWNSII GL   GY EEA+  F+ M+++ IKP+GVT
Sbjct: 217 MYAKCGSLDKSLVVFFKLRKKNLFCWNSIIEGLAVHGYAEEALAMFSRMQREKIKPNGVT 276

Query: 253 FVGLLSGCSHSGLTSEGR 306
           F+ +L  C+H+GL  EGR
Sbjct: 277 FISVLGACTHAGLVEEGR 294


>ref|XP_002301860.1| predicted protein [Populus trichocarpa] gi|222843586|gb|EEE81133.1|
           predicted protein [Populus trichocarpa]
          Length = 933

 Score = 95.9 bits (237), Expect = 3e-18
 Identities = 42/78 (53%), Positives = 57/78 (73%)
 Frame = +1

Query: 73  MFCKCGSIEAALSVFHGLSVKNIFCWNSIILGLGSFGYGEEAMTAFADMKKDGIKPDGVT 252
           M+ KCGS++ +L +F  L  KN+FCWNS+I GL   GY EEA+  F  M+++ IKP+GVT
Sbjct: 287 MYAKCGSLDRSLLMFFKLREKNLFCWNSVIEGLAVHGYAEEALAMFDKMEREKIKPNGVT 346

Query: 253 FVGLLSGCSHSGLTSEGR 306
           FV +LS C+H+GL  EGR
Sbjct: 347 FVSVLSACNHAGLIEEGR 364


>ref|NP_172105.4| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
            gi|8810477|gb|AAF80138.1|AC024174_20 Contains similarity
            to an unknown protein T5J8.5 gi|4263522 from Arabidopsis
            thaliana BAC T5J8 gb|AC004044 and contains multiple PPR
            PF|01535 repeats. ESTs gb|AV565358, gb|AV558710,
            gb|AV524184 come from this gene [Arabidopsis thaliana]
            gi|332189826|gb|AEE27947.1| uncharacterized basic
            helix-loop-helix protein [Arabidopsis thaliana]
          Length = 1322

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 41/78 (52%), Positives = 56/78 (71%)
 Frame = +1

Query: 73   MFCKCGSIEAALSVFHGLSVKNIFCWNSIILGLGSFGYGEEAMTAFADMKKDGIKPDGVT 252
            M+ KCGS+E AL VF  L  KN+FCWNSII GL + G+ +EA+  FA M+ + +KP+ VT
Sbjct: 1076 MYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVT 1135

Query: 253  FVGLLSGCSHSGLTSEGR 306
            FV + + C+H+GL  EGR
Sbjct: 1136 FVSVFTACTHAGLVDEGR 1153