BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00023013
         (574 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002489257.1| hypothetical protein SORBIDRAFT_0011s003210 ...   117   1e-24
gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse ...   111   7e-23
gb|AAO00713.1| retrotransposon protein, putative, unclassified [...   110   1e-22
gb|AAP54692.2| retrotransposon protein, putative, unclassified [...   110   1e-22
ref|XP_002450418.1| hypothetical protein SORBIDRAFT_05g005061 [S...   105   7e-21

>ref|XP_002489257.1| hypothetical protein SORBIDRAFT_0011s003210 [Sorghum bicolor]
           gi|241947006|gb|EES20151.1| hypothetical protein
           SORBIDRAFT_0011s003210 [Sorghum bicolor]
          Length = 821

 Score =  117 bits (293), Expect = 1e-24
 Identities = 65/191 (34%), Positives = 105/191 (54%), Gaps = 2/191 (1%)
 Frame = +1

Query: 4   NSRGSGRPSMMEELKKKIKDVRPIFMFVMETKCSVNKGVSLIKRLGDFESFVVPSRGLSG 183
           N RG GRP  ++E+ + + + +P  +F+MET+    K + L +RLG   + VV S GLSG
Sbjct: 82  NCRGCGRPEAVQEIHQLVVEKKPAVVFLMETRMGEEKALGLARRLGFQNAIVVKSEGLSG 141

Query: 184 GLWIFWEKSVVV-EVMMSDSWFIHCKIAVKVNGVQ-ECFILSCVYGNSKSCVRRLQWPVL 357
           GL + W  +V+V E+  S S   H  + +  + ++   + L+  YG  +   RR  W +L
Sbjct: 142 GLMLMWHGNVMVAELTKSRS---HIDVILSCDHLKISHWRLTGFYGEPRWERRRESWYLL 198

Query: 358 AMFKPNNNESWLLMGDFNEITCPEEKCGGKPFNYPKVRFFLDMIDECELFDLAFVGSIYT 537
              +  +++ WL +GDFNE+   EE+ G       +V  F D++++C L DL F G  YT
Sbjct: 199 RFLRAQSSDPWLCLGDFNEVLAMEEQMGANEREMWQVTAFQDVVNDCALTDLGFHGLPYT 258

Query: 538 WTNKQNGRHRI 570
           W N+Q G   +
Sbjct: 259 WDNRQEGGRNV 269


>gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse transcriptase [Oryza sativa
           Japonica Group]
          Length = 1382

 Score =  111 bits (278), Expect = 7e-23
 Identities = 64/184 (34%), Positives = 96/184 (52%)
 Frame = +1

Query: 4   NSRGSGRPSMMEELKKKIKDVRPIFMFVMETKCSVNKGVSLIKRLGDFESFVVPSRGLSG 183
           N RG G  + + EL+  +K +RP  +F+ ETK    +  +L+  LG   SF V   GLSG
Sbjct: 12  NCRGLGSAATVGELRWLVKSLRPSLVFLSETKMRDKQARNLMWSLGFSGSFAVSCEGLSG 71

Query: 184 GLWIFWEKSVVVEVMMSDSWFIHCKIAVKVNGVQECFILSCVYGNSKSCVRRLQWPVLAM 363
           GL +FW  +  V +   +S FI   ++ +       + +S VYG  K  +R   W +L  
Sbjct: 72  GLALFWTTAYTVSLRGFNSHFIDVLVSTEE---LPPWRISFVYGEPKRELRHFFWNLLRR 128

Query: 364 FKPNNNESWLLMGDFNEITCPEEKCGGKPFNYPKVRFFLDMIDECELFDLAFVGSIYTWT 543
                   WL  GDFNE+ C +E  G +  + P ++ F   +D+C L DL FVG  +TW+
Sbjct: 129 LHDQWRGPWLCCGDFNEVLCLDEHLGMRERSEPHMQHFRSCLDDCGLIDLGFVGPKFTWS 188

Query: 544 NKQN 555
           NKQ+
Sbjct: 189 NKQD 192


>gb|AAO00713.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1557

 Score =  110 bits (276), Expect = 1e-22
 Identities = 66/190 (34%), Positives = 102/190 (53%)
 Frame = +1

Query: 1    WNSRGSGRPSMMEELKKKIKDVRPIFMFVMETKCSVNKGVSLIKRLGDFESFVVPSRGLS 180
            WN RG G  + ++EL   +K+    F+F+ ET+  V+K   L  RLG      V S G+S
Sbjct: 439  WNCRGIGNATTVQELCALVKEASSQFVFLCETRQPVDKIKRLRNRLGLRGFAGVSSDGMS 498

Query: 181  GGLWIFWEKSVVVEVMMSDSWFIHCKIAVKVNGVQECFILSCVYGNSKSCVRRLQWPVLA 360
            GGL +FW +SV VE++  +  FI   I +  N     +  + VYG  +   R   W +L 
Sbjct: 499  GGLALFWHESVHVEILNKNERFIDAYIRLSPN--DPLWHATFVYGEPRVENRHKMWSLLN 556

Query: 361  MFKPNNNESWLLMGDFNEITCPEEKCGGKPFNYPKVRFFLDMIDECELFDLAFVGSIYTW 540
              K ++N SWL++GDFNE     E    KP +  +++ F D++D CEL DL   G  +T+
Sbjct: 557  SIKQSSNLSWLVIGDFNEALWQFEHFSRKPRSDAQMQAFRDVLDTCELHDLGISGLPHTY 616

Query: 541  TNKQNGRHRI 570
             N++ G + +
Sbjct: 617  DNRRGGWNNV 626


>gb|AAP54692.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1585

 Score =  110 bits (276), Expect = 1e-22
 Identities = 66/190 (34%), Positives = 102/190 (53%)
 Frame = +1

Query: 1    WNSRGSGRPSMMEELKKKIKDVRPIFMFVMETKCSVNKGVSLIKRLGDFESFVVPSRGLS 180
            WN RG G  + ++EL   +K+    F+F+ ET+  V+K   L  RLG      V S G+S
Sbjct: 467  WNCRGIGNATTVQELCALVKEASSQFVFLCETRQPVDKIKRLRNRLGLRGFAGVSSDGMS 526

Query: 181  GGLWIFWEKSVVVEVMMSDSWFIHCKIAVKVNGVQECFILSCVYGNSKSCVRRLQWPVLA 360
            GGL +FW +SV VE++  +  FI   I +  N     +  + VYG  +   R   W +L 
Sbjct: 527  GGLALFWHESVHVEILNKNERFIDAYIRLSPN--DPLWHATFVYGEPRVENRHKMWSLLN 584

Query: 361  MFKPNNNESWLLMGDFNEITCPEEKCGGKPFNYPKVRFFLDMIDECELFDLAFVGSIYTW 540
              K ++N SWL++GDFNE     E    KP +  +++ F D++D CEL DL   G  +T+
Sbjct: 585  SIKQSSNLSWLVIGDFNEALWQFEHFSRKPRSDAQMQAFRDVLDTCELHDLGISGLPHTY 644

Query: 541  TNKQNGRHRI 570
             N++ G + +
Sbjct: 645  DNRRGGWNNV 654


>ref|XP_002450418.1| hypothetical protein SORBIDRAFT_05g005061 [Sorghum bicolor]
           gi|241936261|gb|EES09406.1| hypothetical protein
           SORBIDRAFT_05g005061 [Sorghum bicolor]
          Length = 753

 Score =  105 bits (261), Expect = 7e-21
 Identities = 60/188 (31%), Positives = 94/188 (50%)
 Frame = +1

Query: 1   WNSRGSGRPSMMEELKKKIKDVRPIFMFVMETKCSVNKGVSLIKRLGDFESFVVPSRGLS 180
           WN RG G P+ ++EL+   KD  P  MF+MET+ S  +  +L   L    SF V S G S
Sbjct: 6   WNCRGIGNPATVKELRDLAKDYAPSVMFIMETQISKYRVENLRYTLSFDNSFAVNSSGRS 65

Query: 181 GGLWIFWEKSVVVEVMMSDSWFIHCKIAVKVNGVQECFILSCVYGNSKSCVRRLQWPVLA 360
           GGL +FW   V++ +    ++  H    +  +G +E   +S +YG      R   W ++ 
Sbjct: 66  GGLGLFWNNDVLLSIQKYSNY--HIDTIISEHG-KEPRRMSFIYGEPNRSFRYRTWDIMK 122

Query: 361 MFKPNNNESWLLMGDFNEITCPEEKCGGKPFNYPKVRFFLDMIDECELFDLAFVGSIYTW 540
             + + +  W+ MGDFNEI   EE+ G        +    D +D C+L D+ ++G  +T+
Sbjct: 123 QMRSDTDLPWVCMGDFNEILRREEQLGPNEREEYLMEGVRDAVDMCQLRDIGYIGLDWTF 182

Query: 541 TNKQNGRH 564
             K  G H
Sbjct: 183 EKKVAGGH 190