BLASTX nr result
ID: Coptis23_contig00022456
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00022456
(1120 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containi... 132 1e-28
ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 129 2e-27
ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containi... 129 2e-27
ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containi... 123 9e-26
ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago t... 118 3e-24
>ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 536
Score = 132 bits (333), Expect = 1e-28
Identities = 62/90 (68%), Positives = 78/90 (86%)
Frame = +2
Query: 11 KTRLAGVAAERLFELERHSGAYVLLSNMYAADGKYDDAKRIRKIMKDRGVEKTPGCSSID 190
+T +A AA+RLF LE HSGAYVLLSN+YAA GK D +RIRK+M++RGV+K PGCSS+
Sbjct: 425 QTEVAEDAAQRLFHLEHHSGAYVLLSNLYAAAGKQDHVRRIRKMMENRGVDKAPGCSSVK 484
Query: 191 LNGLVHEFIAGEETHPQMEDIYQVLEKMNK 280
+NG+VHEFIAGEETH QME++++VLEKMNK
Sbjct: 485 INGVVHEFIAGEETHLQMEEVHRVLEKMNK 514
Score = 56.6 bits (135), Expect(2) = 1e-11
Identities = 34/91 (37%), Positives = 47/91 (51%)
Frame = +2
Query: 410 YSGMPLEGPQNIK*HGYYIGVQPKREN*GCSADFVSRAELFEEAKEVMQRMPYSCSTSEX 589
YSGM E + + ++PK E+ GC D + RA L +EAKE++ +MP S S +E
Sbjct: 350 YSGMAHEAIRLLNSMCTVYNMEPKSEHYGCIVDLLGRAGLLKEAKELILKMPNSSSPTEQ 409
Query: 590 XXXXXXXXXXXCDHPKTRLAGVAA*RLFQLE 682
C H +T +A AA RLF LE
Sbjct: 410 AIAWRALLSACCSHGQTEVAEDAAQRLFHLE 440
Score = 39.7 bits (91), Expect(2) = 1e-11
Identities = 17/26 (65%), Positives = 22/26 (84%)
Frame = +3
Query: 681 NHSGAYVILYNMYAADGKQNDAKRIR 758
+HSGAYV+L N+YAA GKQ+ +RIR
Sbjct: 441 HHSGAYVLLSNLYAAAGKQDHVRRIR 466
>ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Cucumis sativus]
Length = 532
Score = 129 bits (323), Expect = 2e-27
Identities = 62/90 (68%), Positives = 80/90 (88%)
Frame = +2
Query: 11 KTRLAGVAAERLFELERHSGAYVLLSNMYAADGKYDDAKRIRKIMKDRGVEKTPGCSSID 190
+T+ A VAAERLF+LERHSGAYVLLSNMYAA GK++DAKR+R +MK +GVEK PGCSSI
Sbjct: 425 QTQQAEVAAERLFQLERHSGAYVLLSNMYAALGKHEDAKRVRNMMKLKGVEKVPGCSSIK 484
Query: 191 LNGLVHEFIAGEETHPQMEDIYQVLEKMNK 280
+NG+V+EFIAGE+TH +++I+ VLE++NK
Sbjct: 485 VNGVVNEFIAGEKTHRHIDNIHLVLEELNK 514
Score = 59.3 bits (142), Expect(2) = 4e-13
Identities = 32/71 (45%), Positives = 42/71 (59%)
Frame = +2
Query: 470 VQPKREN*GCSADFVSRAELFEEAKEVMQRMPYSCSTSEXXXXXXXXXXXXCDHPKTRLA 649
++PK E+ GC D +SR FEEA+ V+QR+P + S SE C H +T+ A
Sbjct: 370 IEPKSEHYGCVIDLLSRVGRFEEAEGVIQRLPKTASPSEEAVAWRAFLSACCKHGQTQQA 429
Query: 650 GVAA*RLFQLE 682
VAA RLFQLE
Sbjct: 430 EVAAERLFQLE 440
Score = 42.4 bits (98), Expect(2) = 4e-13
Identities = 19/25 (76%), Positives = 21/25 (84%)
Frame = +3
Query: 684 HSGAYVILYNMYAADGKQNDAKRIR 758
HSGAYV+L NMYAA GK DAKR+R
Sbjct: 442 HSGAYVLLSNMYAALGKHEDAKRVR 466
>ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Cucumis sativus]
Length = 532
Score = 129 bits (323), Expect = 2e-27
Identities = 62/90 (68%), Positives = 80/90 (88%)
Frame = +2
Query: 11 KTRLAGVAAERLFELERHSGAYVLLSNMYAADGKYDDAKRIRKIMKDRGVEKTPGCSSID 190
+T+ A VAAERLF+LERHSGAYVLLSNMYAA GK++DAKR+R +MK +GVEK PGCSSI
Sbjct: 425 QTQQAEVAAERLFQLERHSGAYVLLSNMYAALGKHEDAKRVRNMMKLKGVEKVPGCSSIK 484
Query: 191 LNGLVHEFIAGEETHPQMEDIYQVLEKMNK 280
+NG+V+EFIAGE+TH +++I+ VLE++NK
Sbjct: 485 VNGVVNEFIAGEKTHRHIDNIHLVLEELNK 514
Score = 59.3 bits (142), Expect(2) = 4e-13
Identities = 32/71 (45%), Positives = 42/71 (59%)
Frame = +2
Query: 470 VQPKREN*GCSADFVSRAELFEEAKEVMQRMPYSCSTSEXXXXXXXXXXXXCDHPKTRLA 649
++PK E+ GC D +SR FEEA+ V+QR+P + S SE C H +T+ A
Sbjct: 370 IEPKSEHYGCVIDLLSRVGRFEEAEGVIQRLPKTASPSEEAVAWRAFLSACCKHGQTQQA 429
Query: 650 GVAA*RLFQLE 682
VAA RLFQLE
Sbjct: 430 EVAAERLFQLE 440
Score = 42.4 bits (98), Expect(2) = 4e-13
Identities = 19/25 (76%), Positives = 21/25 (84%)
Frame = +3
Query: 684 HSGAYVILYNMYAADGKQNDAKRIR 758
HSGAYV+L NMYAA GK DAKR+R
Sbjct: 442 HSGAYVLLSNMYAALGKHEDAKRVR 466
>ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 518
Score = 123 bits (308), Expect = 9e-26
Identities = 56/93 (60%), Positives = 77/93 (82%)
Frame = +2
Query: 11 KTRLAGVAAERLFELERHSGAYVLLSNMYAADGKYDDAKRIRKIMKDRGVEKTPGCSSID 190
+ +LA AA+RL LE HSG YVLLSN+YAA GK+ DA+R+R +M+++GV+K PGCSS++
Sbjct: 426 QAQLAERAAKRLLRLENHSGVYVLLSNLYAASGKHSDARRVRNMMRNKGVDKAPGCSSVE 485
Query: 191 LNGLVHEFIAGEETHPQMEDIYQVLEKMNKLLD 289
++G+V EFIAGEETHPQME+I+ VLE ++ LD
Sbjct: 486 IDGVVSEFIAGEETHPQMEEIHSVLEILHMQLD 518
Score = 49.7 bits (117), Expect(2) = 2e-10
Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Frame = +2
Query: 410 YSGMPLEGPQNIK*HGYYIGVQPKREN*GCSADFVSRAELFEEAKEVMQRM-PYSCSTSE 586
YSGM EG Q + ++PK E+ GC D +SRA LF EA +++R+ S + SE
Sbjct: 350 YSGMAHEGLQLLDKMSSLYEIEPKSEHYGCLVDLLSRAGLFGEAMVMIRRITSTSWNGSE 409
Query: 587 XXXXXXXXXXXXCDHPKTRLAGVAA*RLFQLES 685
C+H + +LA AA RL +LE+
Sbjct: 410 ETLAWRAFLSACCNHGQAQLAERAAKRLLRLEN 442
Score = 42.7 bits (99), Expect(2) = 2e-10
Identities = 17/26 (65%), Positives = 22/26 (84%)
Frame = +3
Query: 681 NHSGAYVILYNMYAADGKQNDAKRIR 758
NHSG YV+L N+YAA GK +DA+R+R
Sbjct: 442 NHSGVYVLLSNLYAASGKHSDARRVR 467
>ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355515352|gb|AES96975.1| Pentatricopeptide repeat
protein [Medicago truncatula]
Length = 525
Score = 118 bits (295), Expect = 3e-24
Identities = 54/95 (56%), Positives = 78/95 (82%), Gaps = 2/95 (2%)
Frame = +2
Query: 11 KTRLAGVAAERLFELERH--SGAYVLLSNMYAADGKYDDAKRIRKIMKDRGVEKTPGCSS 184
+T+LA +AAE++ +L+ H SG YVLLSN+YAA GK+ DA+R+R +MK +G K PGCSS
Sbjct: 428 ETQLAELAAEKVLQLDNHIHSGVYVLLSNLYAASGKHSDARRVRDMMKIKGTNKAPGCSS 487
Query: 185 IDLNGLVHEFIAGEETHPQMEDIYQVLEKMNKLLD 289
++++G++ EFIAGE+THPQME+I+ VL+KM+ LD
Sbjct: 488 VEIDGVISEFIAGEKTHPQMEEIHSVLKKMHMQLD 522