BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00022454
         (569 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAT39297.2| Gag-pol protein, putative [Solanum demissum]           287   1e-75
gb|AAT38724.1| Putative retrotransposon protein, identical [Sola...   285   3e-75
gb|AAT38744.1| Putative gag-pol polyprotein, identical [Solanum ...   285   3e-75
gb|ABI34354.1| Retrotransposon gag protein [Solanum demissum]         280   9e-74
gb|ABA98194.1| retrotransposon protein, putative, Ty3-gypsy subc...   275   4e-72

>gb|AAT39297.2| Gag-pol protein, putative [Solanum demissum]
          Length = 1554

 Score =  287 bits (734), Expect = 1e-75
 Identities = 138/188 (73%), Positives = 156/188 (82%)
 Frame = +3

Query: 3    NAPAAFMDLMHRVMWKYLDQFVIVFIDDILIYSKTRAEHKEHLRMVFQTLVDHQLYAKFS 182
            NAPAAFMDLM+RV   YLD FVIVFIDDIL+YS+   +H  HLR V QTL D++LYAKFS
Sbjct: 871  NAPAAFMDLMNRVFKPYLDTFVIVFIDDILVYSRNEEDHASHLRTVLQTLKDNKLYAKFS 930

Query: 183  KCEFWLNEMRFLGHVVSENGIKVDRSKIEAVNNWPRPTSATEIRSFLGLAGYYRRFVEGF 362
            KCEFWL  + FLGH+VS +GIKVD  KIEA+ NWPRPTS TEIRSFLGLAGYYRRFVEGF
Sbjct: 931  KCEFWLKSVAFLGHIVSGDGIKVDTGKIEAMQNWPRPTSPTEIRSFLGLAGYYRRFVEGF 990

Query: 363  SSIASSLTRLTQKDVKFEWTEACEKAFQELKTRLITAPVLTIPDPEKSYVIYTDASNTGL 542
            SSIAS LT+LTQK VKF W+EACEK+FQE K RLITAPVLT+P+  + +V+Y DAS  GL
Sbjct: 991  SSIASPLTKLTQKTVKFRWSEACEKSFQEFKKRLITAPVLTLPEGTQGFVVYCDASRVGL 1050

Query: 543  GCVLMQEG 566
            GCVLMQ G
Sbjct: 1051 GCVLMQNG 1058


>gb|AAT38724.1| Putative retrotransposon protein, identical [Solanum demissum]
          Length = 1602

 Score =  285 bits (730), Expect = 3e-75
 Identities = 139/188 (73%), Positives = 155/188 (82%)
 Frame = +3

Query: 3    NAPAAFMDLMHRVMWKYLDQFVIVFIDDILIYSKTRAEHKEHLRMVFQTLVDHQLYAKFS 182
            NAPAAFMDLM+RV   YLD FVI+FIDDILIYS+   +H  HLR V QTL D +LYAKFS
Sbjct: 792  NAPAAFMDLMNRVFRPYLDMFVIIFIDDILIYSRNEEDHASHLRTVLQTLKDKELYAKFS 851

Query: 183  KCEFWLNEMRFLGHVVSENGIKVDRSKIEAVNNWPRPTSATEIRSFLGLAGYYRRFVEGF 362
            KCEFWL  + FLGH+VS +GIKVD  KIEAV NWPRPTS TEIRSFLGLAGYYRRFVEGF
Sbjct: 852  KCEFWLKSVAFLGHIVSGDGIKVDTRKIEAVQNWPRPTSPTEIRSFLGLAGYYRRFVEGF 911

Query: 363  SSIASSLTRLTQKDVKFEWTEACEKAFQELKTRLITAPVLTIPDPEKSYVIYTDASNTGL 542
            SSIAS LT+LTQK  KF+W+EACEK+FQELK RLITAPVLT+P+  +  V+Y DAS  GL
Sbjct: 912  SSIASPLTKLTQKTGKFQWSEACEKSFQELKKRLITAPVLTLPEGTQGLVVYCDASRIGL 971

Query: 543  GCVLMQEG 566
            GCVLMQ G
Sbjct: 972  GCVLMQNG 979


>gb|AAT38744.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1515

 Score =  285 bits (730), Expect = 3e-75
 Identities = 139/188 (73%), Positives = 155/188 (82%)
 Frame = +3

Query: 3    NAPAAFMDLMHRVMWKYLDQFVIVFIDDILIYSKTRAEHKEHLRMVFQTLVDHQLYAKFS 182
            NAPAAFMDLM+RV   YLD FVI+FIDDILIYS+   +H  HLR V QTL D +LYAKFS
Sbjct: 786  NAPAAFMDLMNRVFRPYLDMFVIIFIDDILIYSRNEEDHASHLRTVLQTLKDKELYAKFS 845

Query: 183  KCEFWLNEMRFLGHVVSENGIKVDRSKIEAVNNWPRPTSATEIRSFLGLAGYYRRFVEGF 362
            KCEFWL  + FLGH+VS +GIKVD  KIEAV NWPRPTS TEIRSFLGLAGYYRRFVEGF
Sbjct: 846  KCEFWLKSVAFLGHIVSGDGIKVDTRKIEAVQNWPRPTSPTEIRSFLGLAGYYRRFVEGF 905

Query: 363  SSIASSLTRLTQKDVKFEWTEACEKAFQELKTRLITAPVLTIPDPEKSYVIYTDASNTGL 542
            SSIAS LT+LTQK  KF+W+EACEK+FQELK RLITAPVLT+P+  +  V+Y DAS  GL
Sbjct: 906  SSIASPLTKLTQKTGKFQWSEACEKSFQELKKRLITAPVLTLPEGTQGLVVYCDASRIGL 965

Query: 543  GCVLMQEG 566
            GCVLMQ G
Sbjct: 966  GCVLMQNG 973


>gb|ABI34354.1| Retrotransposon gag protein [Solanum demissum]
          Length = 4543

 Score =  280 bits (717), Expect = 9e-74
 Identities = 136/186 (73%), Positives = 154/186 (82%)
 Frame = +3

Query: 3    NAPAAFMDLMHRVMWKYLDQFVIVFIDDILIYSKTRAEHKEHLRMVFQTLVDHQLYAKFS 182
            NAPAAFMDLM+RV   YLD FVIVFIDDILIYS+   +H  HLR V QTL D +LYAKFS
Sbjct: 568  NAPAAFMDLMNRVFKPYLDMFVIVFIDDILIYSRNEGDHASHLRTVLQTLKDKELYAKFS 627

Query: 183  KCEFWLNEMRFLGHVVSENGIKVDRSKIEAVNNWPRPTSATEIRSFLGLAGYYRRFVEGF 362
            KCEFWL  + FLGH+VS +GIKVD  KIEAV NWPRPTS TEIRSFLGLAGYYRRFVEGF
Sbjct: 628  KCEFWLKSVAFLGHIVSGDGIKVDTWKIEAVQNWPRPTSPTEIRSFLGLAGYYRRFVEGF 687

Query: 363  SSIASSLTRLTQKDVKFEWTEACEKAFQELKTRLITAPVLTIPDPEKSYVIYTDASNTGL 542
            S+IAS LT+LTQK VK +W+EACEK+FQELK RL TAPVLT+P+  + +V++ DAS  GL
Sbjct: 688  STIASPLTKLTQKTVKLQWSEACEKSFQELKKRLTTAPVLTLPEGTQGFVVHCDASRVGL 747

Query: 543  GCVLMQ 560
            GCVLMQ
Sbjct: 748  GCVLMQ 753



 Score =  280 bits (717), Expect = 9e-74
 Identities = 136/186 (73%), Positives = 154/186 (82%)
 Frame = +3

Query: 3    NAPAAFMDLMHRVMWKYLDQFVIVFIDDILIYSKTRAEHKEHLRMVFQTLVDHQLYAKFS 182
            NAPAAFMDLM+RV   YLD FVIVFIDDILIYS+   +H  HLR V QTL D +LYAKFS
Sbjct: 2078 NAPAAFMDLMNRVFKPYLDMFVIVFIDDILIYSRNEGDHASHLRTVLQTLKDKELYAKFS 2137

Query: 183  KCEFWLNEMRFLGHVVSENGIKVDRSKIEAVNNWPRPTSATEIRSFLGLAGYYRRFVEGF 362
            KCEFWL  + FLGH+VS +GIKVD  KIEAV NWPRPTS TEIRSFLGLAGYYRRFVEGF
Sbjct: 2138 KCEFWLKSVAFLGHIVSGDGIKVDTWKIEAVQNWPRPTSPTEIRSFLGLAGYYRRFVEGF 2197

Query: 363  SSIASSLTRLTQKDVKFEWTEACEKAFQELKTRLITAPVLTIPDPEKSYVIYTDASNTGL 542
            S+IAS LT+LTQK VK +W+EACEK+FQELK RL TAPVLT+P+  + +V++ DAS  GL
Sbjct: 2198 STIASPLTKLTQKTVKLQWSEACEKSFQELKKRLTTAPVLTLPEGTQGFVVHCDASRVGL 2257

Query: 543  GCVLMQ 560
            GCVLMQ
Sbjct: 2258 GCVLMQ 2263



 Score =  280 bits (717), Expect = 9e-74
 Identities = 136/186 (73%), Positives = 154/186 (82%)
 Frame = +3

Query: 3    NAPAAFMDLMHRVMWKYLDQFVIVFIDDILIYSKTRAEHKEHLRMVFQTLVDHQLYAKFS 182
            NAPAAFMDLM+RV   YLD FVIVFIDDILIYS+   +H  HLR V QTL D +LYAKFS
Sbjct: 3588 NAPAAFMDLMNRVFKPYLDMFVIVFIDDILIYSRNEGDHASHLRTVLQTLKDKELYAKFS 3647

Query: 183  KCEFWLNEMRFLGHVVSENGIKVDRSKIEAVNNWPRPTSATEIRSFLGLAGYYRRFVEGF 362
            KCEFWL  + FLGH+VS +GIKVD  KIEAV NWPRPTS TEIRSFLGLAGYYRRFVEGF
Sbjct: 3648 KCEFWLKSVAFLGHIVSGDGIKVDTWKIEAVQNWPRPTSPTEIRSFLGLAGYYRRFVEGF 3707

Query: 363  SSIASSLTRLTQKDVKFEWTEACEKAFQELKTRLITAPVLTIPDPEKSYVIYTDASNTGL 542
            S+IAS LT+LTQK VK +W+EACEK+FQELK RL TAPVLT+P+  + +V++ DAS  GL
Sbjct: 3708 STIASPLTKLTQKTVKLQWSEACEKSFQELKKRLTTAPVLTLPEGTQGFVVHCDASRVGL 3767

Query: 543  GCVLMQ 560
            GCVLMQ
Sbjct: 3768 GCVLMQ 3773


>gb|ABA98194.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1375

 Score =  275 bits (703), Expect = 4e-72
 Identities = 122/188 (64%), Positives = 159/188 (84%)
 Frame = +3

Query: 3    NAPAAFMDLMHRVMWKYLDQFVIVFIDDILIYSKTRAEHKEHLRMVFQTLVDHQLYAKFS 182
            NAPA FM+LM++V  +YLD+FV+VFIDDILIYS+T+ EH+EHLR+  + L +HQLYAKFS
Sbjct: 566  NAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEHEEHLRLALEKLREHQLYAKFS 625

Query: 183  KCEFWLNEMRFLGHVVSENGIKVDRSKIEAVNNWPRPTSATEIRSFLGLAGYYRRFVEGF 362
            KCEFWL+E++FLGHV+S  G+ VD S +E+V NW +P + +EIRSFLGLAGYYRRF+E F
Sbjct: 626  KCEFWLSEVKFLGHVISAGGVAVDPSNVESVTNWKQPKTVSEIRSFLGLAGYYRRFIENF 685

Query: 363  SSIASSLTRLTQKDVKFEWTEACEKAFQELKTRLITAPVLTIPDPEKSYVIYTDASNTGL 542
            S IA  +TRL QKDVK++W+E CE++FQELK RL++AP+LT+PDP+K + +Y DAS  GL
Sbjct: 686  SKIAKPMTRLLQKDVKYKWSEECEQSFQELKNRLVSAPILTLPDPKKGFQVYCDASKLGL 745

Query: 543  GCVLMQEG 566
            GCVLMQ+G
Sbjct: 746  GCVLMQDG 753