BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00022450
         (453 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003528600.1| PREDICTED: pentatricopeptide repeat-containi...   102   3e-20
ref|XP_004140275.1| PREDICTED: pentatricopeptide repeat-containi...    94   9e-18
ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containi...    80   2e-13
emb|CBI36131.3| unnamed protein product [Vitis vinifera]               80   2e-13
ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containi...    77   1e-12

>ref|XP_003528600.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 813

 Score =  102 bits (254), Expect = 3e-20
 Identities = 55/111 (49%), Positives = 70/111 (63%), Gaps = 1/111 (0%)
 Frame = -2

Query: 335 ILHHCTSPHSLKQAKQAHAFAILHGVFHHSPSISASLILTYAKLGYSLTSRLLFDQS-SF 159
           +L  CT   +L Q KQ HA+++LHG    S S+ ASLIL YA  G+   S LLF  S ++
Sbjct: 40  LLQLCTLCDTLSQTKQVHAYSLLHGFLPRSVSLCASLILQYASFGHPSNSLLLFQHSVAY 99

Query: 158 KHKSFLWNTLIRAYSITCSYYNAFEIYNLMFYYGVRPDGHTFPFVLKVCAD 6
              +FLWNTLIRA SI    ++ F  YN M   GV+PD  T+PFVLKVC+D
Sbjct: 100 SRSAFLWNTLIRANSI-AGVFDGFGTYNTMVRAGVKPDECTYPFVLKVCSD 149


>ref|XP_004140275.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 833

 Score = 94.4 bits (233), Expect = 9e-18
 Identities = 55/115 (47%), Positives = 71/115 (61%), Gaps = 2/115 (1%)
 Frame = -2

Query: 344 HSLILHHCTSPHSLKQAKQAHAFAILHGVFHHSPSISASLILTYAKLGYSLTSRLLFDQS 165
           H  +L  C+   SL Q KQ HA  IL+G    S S+ ASLIL YAK  +  +   LF+Q+
Sbjct: 57  HINLLTLCSKVQSLLQTKQVHALGILNGFLPRSVSLCASLILNYAKFQHPGSFCSLFNQT 116

Query: 164 SFK-HKSFLWNTLIRAYSITCS-YYNAFEIYNLMFYYGVRPDGHTFPFVLKVCAD 6
                 +FLWNTLIRA+SI  +  ++ FE YN M   GV+ D HTFPFVLK+C+D
Sbjct: 117 FQNCRTAFLWNTLIRAHSIAWNGTFDGFETYNRMVRRGVQLDDHTFPFVLKLCSD 171


>ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 46/112 (41%), Positives = 61/112 (54%)
 Frame = -2

Query: 344 HSLILHHCTSPHSLKQAKQAHAFAILHGVFHHSPSISASLILTYAKLGYSLTSRLLFDQS 165
           ++ +L  C +  ++K  KQ HA   L G F     I+  L+  Y       ++RLLFD+ 
Sbjct: 78  YASLLQSCIARKAIKPGKQLHAQVCLAG-FGFDTVIATKLVNLYCVCDSLSSARLLFDRI 136

Query: 164 SFKHKSFLWNTLIRAYSITCSYYNAFEIYNLMFYYGVRPDGHTFPFVLKVCA 9
             KH  FLWN LIR Y+    Y  A ++Y  MF YG+ PD  TFPFVLK CA
Sbjct: 137 P-KHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACA 187


>emb|CBI36131.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 46/112 (41%), Positives = 61/112 (54%)
 Frame = -2

Query: 344 HSLILHHCTSPHSLKQAKQAHAFAILHGVFHHSPSISASLILTYAKLGYSLTSRLLFDQS 165
           ++ +L  C +  ++K  KQ HA   L G F     I+  L+  Y       ++RLLFD+ 
Sbjct: 78  YASLLQSCIARKAIKPGKQLHAQVCLAG-FGFDTVIATKLVNLYCVCDSLSSARLLFDRI 136

Query: 164 SFKHKSFLWNTLIRAYSITCSYYNAFEIYNLMFYYGVRPDGHTFPFVLKVCA 9
             KH  FLWN LIR Y+    Y  A ++Y  MF YG+ PD  TFPFVLK CA
Sbjct: 137 P-KHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACA 187


>ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 41/111 (36%), Positives = 60/111 (54%)
 Frame = -2

Query: 335 ILHHCTSPHSLKQAKQAHAFAILHGVFHHSPSISASLILTYAKLGYSLTSRLLFDQSSFK 156
           +L   T+  SL QA Q HA     G    +  ++  L   YA  G+   ++ +FDQ   K
Sbjct: 28  LLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQHIFDQIVLK 87

Query: 155 HKSFLWNTLIRAYSITCSYYNAFEIYNLMFYYGVRPDGHTFPFVLKVCADV 3
           + SFLWN++IR Y+   S   A  +Y  M ++G +PD  T+PFVLK C D+
Sbjct: 88  N-SFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDL 137