BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00022446
         (336 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002299427.1| predicted protein [Populus trichocarpa] gi|2...   138   5e-31
ref|XP_002527873.1| nut2, putative [Ricinus communis] gi|2235327...   137   1e-30
emb|CBI34587.3| unnamed protein product [Vitis vinifera]              136   2e-30
ref|XP_002280081.1| PREDICTED: mediator of RNA polymerase II tra...   136   2e-30
tpg|DAA62423.1| TPA: mediator complex subunit 10 CG5057-PA isofo...   136   2e-30

>ref|XP_002299427.1| predicted protein [Populus trichocarpa] gi|222846685|gb|EEE84232.1|
           predicted protein [Populus trichocarpa]
          Length = 190

 Score =  138 bits (347), Expect = 5e-31
 Identities = 67/82 (81%), Positives = 74/82 (90%)
 Frame = -2

Query: 248 DESKQNLNNVINSIDKTLGLLHQLHLTVSSFNVASQLPLLQRVNALVTELDTMQRLSENC 69
           D+ KQNLN VINSI KTLGLLHQL+LTVSSFN ASQLPLLQR+N LVTELD M +LSE C
Sbjct: 34  DDPKQNLNQVINSIQKTLGLLHQLYLTVSSFNTASQLPLLQRLNGLVTELDNMVKLSEKC 93

Query: 68  NIQVPMEIVNLIDDGKNPDEFN 3
           NIQVPME++NLIDDGKNPDEF+
Sbjct: 94  NIQVPMEVLNLIDDGKNPDEFS 115


>ref|XP_002527873.1| nut2, putative [Ricinus communis] gi|223532724|gb|EEF34504.1| nut2,
           putative [Ricinus communis]
          Length = 187

 Score =  137 bits (344), Expect = 1e-30
 Identities = 70/97 (72%), Positives = 78/97 (80%), Gaps = 4/97 (4%)
 Frame = -2

Query: 284 GGITQQSNDQQQ----DESKQNLNNVINSIDKTLGLLHQLHLTVSSFNVASQLPLLQRVN 117
           G +  Q ND       D+ KQNLNNVINSI KTLGLLHQL+LTVSSFN ASQLPLLQR+N
Sbjct: 15  GMLPSQVNDTAAAAAADDPKQNLNNVINSIQKTLGLLHQLYLTVSSFNTASQLPLLQRLN 74

Query: 116 ALVTELDTMQRLSENCNIQVPMEIVNLIDDGKNPDEF 6
            LV ELD M +LSE CNIQVP+E++NLIDDGKNPDEF
Sbjct: 75  GLVLELDKMAKLSEKCNIQVPLEVLNLIDDGKNPDEF 111


>emb|CBI34587.3| unnamed protein product [Vitis vinifera]
          Length = 284

 Score =  136 bits (343), Expect = 2e-30
 Identities = 66/81 (81%), Positives = 75/81 (92%)
 Frame = -2

Query: 248 DESKQNLNNVINSIDKTLGLLHQLHLTVSSFNVASQLPLLQRVNALVTELDTMQRLSENC 69
           ++ KQNLN VINSI KTLGLLHQL+LTVSSFNVASQLPLLQR+NALV+ELD M +LSE C
Sbjct: 128 EDPKQNLNQVINSIQKTLGLLHQLYLTVSSFNVASQLPLLQRLNALVSELDNMTKLSEKC 187

Query: 68  NIQVPMEIVNLIDDGKNPDEF 6
           NIQVPME++NLID+GKNPDEF
Sbjct: 188 NIQVPMEVLNLIDEGKNPDEF 208


>ref|XP_002280081.1| PREDICTED: mediator of RNA polymerase II transcription subunit 10
           [Vitis vinifera]
          Length = 194

 Score =  136 bits (343), Expect = 2e-30
 Identities = 66/81 (81%), Positives = 75/81 (92%)
 Frame = -2

Query: 248 DESKQNLNNVINSIDKTLGLLHQLHLTVSSFNVASQLPLLQRVNALVTELDTMQRLSENC 69
           ++ KQNLN VINSI KTLGLLHQL+LTVSSFNVASQLPLLQR+NALV+ELD M +LSE C
Sbjct: 38  EDPKQNLNQVINSIQKTLGLLHQLYLTVSSFNVASQLPLLQRLNALVSELDNMTKLSEKC 97

Query: 68  NIQVPMEIVNLIDDGKNPDEF 6
           NIQVPME++NLID+GKNPDEF
Sbjct: 98  NIQVPMEVLNLIDEGKNPDEF 118


>tpg|DAA62423.1| TPA: mediator complex subunit 10 CG5057-PA isoform 1 [Zea mays]
           gi|414886410|tpg|DAA62424.1| TPA: mediator complex
           subunit 10 CG5057-PA isoform 2 [Zea mays]
          Length = 187

 Score =  136 bits (342), Expect = 2e-30
 Identities = 67/85 (78%), Positives = 76/85 (89%)
 Frame = -2

Query: 260 DQQQDESKQNLNNVINSIDKTLGLLHQLHLTVSSFNVASQLPLLQRVNALVTELDTMQRL 81
           ++ +D SKQNL  V +SI KTLGLLHQL+LTVSSFN ASQLPLLQR+NALV ELDTMQ+L
Sbjct: 27  ERPEDASKQNLAQVTSSIQKTLGLLHQLNLTVSSFNSASQLPLLQRLNALVAELDTMQKL 86

Query: 80  SENCNIQVPMEIVNLIDDGKNPDEF 6
           +E CNIQVPME+VNLIDDGKNPDEF
Sbjct: 87  AEGCNIQVPMEVVNLIDDGKNPDEF 111