BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00022336
         (988 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera]   436   e-120
gb|ABF95851.1| retrotransposon protein, putative, Ty1-copia subc...   393   e-107
gb|AAP94586.1| putative retrotransposon RIRE1 poly protein [Zea ...   382   e-104
emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa Japonica Group]         378   e-102
gb|ABA94191.1| retrotransposon protein, putative, Ty1-copia subc...   378   e-102

>emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera]
          Length = 1316

 Score =  436 bits (1121), Expect = e-120
 Identities = 199/328 (60%), Positives = 265/328 (80%)
 Frame = +3

Query: 3    ASRFCHVYLLKSKDDSLAKFISFKTEVENQLDKKIKIVRSDRGGEYSGPFNKFCENNGIV 182
            ++++C+VYLLKSKD+++ KF+ +KTEVENQL+KKIK++RSDRGGEY  PF   C  +GI+
Sbjct: 557  STKYCYVYLLKSKDEAIEKFVLYKTEVENQLNKKIKVLRSDRGGEYESPFVDICAQHGII 616

Query: 183  HETTAPYAPQSNGIAERKNRTLKDMINSMINSSGASMNLWGEALLTACYILNKIPFKDTD 362
            HETTAPY+PQSNG+AERKNRTLK+M+N+M+ SS    N+WGEA+LTA Y+LNK+P K  +
Sbjct: 617  HETTAPYSPQSNGVAERKNRTLKEMMNAMLISSSLPQNMWGEAILTANYLLNKVPKKKAE 676

Query: 363  KTPYEMWKNRTPSYKFFKVWGCLAKVSIPTPKRTKLGPKTVDCVFIGYAQNSSAYRFLVF 542
            KTPYE+WK R PSY + ++WGCLAKV++P PK+ K+GPKT+DC+FIGYA NS+AYRFLV+
Sbjct: 677  KTPYELWKGRKPSYTYLRMWGCLAKVAVPPPKKVKIGPKTIDCIFIGYAHNSNAYRFLVY 736

Query: 543  KSKNKSVDDNTIIESRDAVFFEDKFPFIERSGGTPSSSTLAPRVREDSSAEDEIELRRSK 722
            +S    +  NTI+ESR+A FFED FP   +S   PSSS       +D + E E+E RRSK
Sbjct: 737  ESNIPDIHKNTIMESRNASFFEDVFPC--KSKEEPSSSKRMLE-SQDQNEEVEVEPRRSK 793

Query: 723  RPRTNTSFGPDFLTFLVEDDPQTYLEAMSSSDAIFWREAILSEYESIITNNTWELVELPP 902
            R RT  SFGPDFLTF++E +PQT+ EA++S++ + W+EAI SE +SI+ N+TWELV+LPP
Sbjct: 794  RVRTEKSFGPDFLTFMLEGEPQTFKEAVNSTEGLMWKEAIKSEIDSILQNHTWELVDLPP 853

Query: 903  GCKTIGNKWLFRKKLKADGSIDKYKARL 986
            GCK + +KW+F++K+K DGSIDKYKARL
Sbjct: 854  GCKPLSSKWIFKRKMKVDGSIDKYKARL 881


>gb|ABF95851.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1075

 Score =  393 bits (1009), Expect = e-107
 Identities = 188/328 (57%), Positives = 248/328 (75%), Gaps = 1/328 (0%)
 Frame = +3

Query: 6    SRFCHVYLLKSKDDSLAKFISFKTEVENQLDKKIKIVRSDRGGEY-SGPFNKFCENNGIV 182
            S++C+VYLL++KD++   F  FK E ENQLD KIKI+RSDRGGEY S  F+KF + +GI+
Sbjct: 423  SKYCYVYLLRTKDEAFEHFKIFKAEAENQLDLKIKILRSDRGGEYLSIEFSKFHQEHGII 482

Query: 183  HETTAPYAPQSNGIAERKNRTLKDMINSMINSSGASMNLWGEALLTACYILNKIPFKDTD 362
            HETT PY+PQSNG+AERKNRTL +++N+M+++SG    +WGEAL TAC++LN++P K T+
Sbjct: 483  HETTPPYSPQSNGVAERKNRTLTNLVNAMLSNSGLPNYMWGEALYTACFVLNRVPAKGTE 542

Query: 363  KTPYEMWKNRTPSYKFFKVWGCLAKVSIPTPKRTKLGPKTVDCVFIGYAQNSSAYRFLVF 542
             TPYE+WK R P+  F KVWGCLAKV+IP  K+ KLGPKTVDCVFIGYAQNS AYRFLV 
Sbjct: 543  VTPYELWKGRKPNLNFLKVWGCLAKVNIPVVKKRKLGPKTVDCVFIGYAQNSLAYRFLVV 602

Query: 543  KSKNKSVDDNTIIESRDAVFFEDKFPFIERSGGTPSSSTLAPRVREDSSAEDEIELRRSK 722
            KS+   V +NT++ESRD  FFED FP   +S   PSS  ++   R   S++D + LRRSK
Sbjct: 603  KSETTEVRENTVMESRDTTFFEDTFPLKVKS---PSSEPISVEPRISISSDDSLNLRRSK 659

Query: 723  RPRTNTSFGPDFLTFLVEDDPQTYLEAMSSSDAIFWREAILSEYESIITNNTWELVELPP 902
            R RT  +FG DF+ +LV+D P T  EA +S++A +W+EA+ SE +SI++N TWE+  LP 
Sbjct: 660  RSRTEKTFGDDFIIYLVDDVPSTLSEAFASAEAAYWKEAVQSEMDSILSNGTWEITHLPQ 719

Query: 903  GCKTIGNKWLFRKKLKADGSIDKYKARL 986
            G + IG + +  KKLK DG+IDK+KARL
Sbjct: 720  GYRAIGYRAIGCKKLKPDGTIDKFKARL 747


>gb|AAP94586.1| putative retrotransposon RIRE1 poly protein [Zea mays]
          Length = 1309

 Score =  382 bits (980), Expect = e-104
 Identities = 181/332 (54%), Positives = 247/332 (74%), Gaps = 4/332 (1%)
 Frame = +3

Query: 3    ASRFCHVYLLKSKDDSLAKFISFKTEVENQLDKKIKIVRSDRGGEY-SGPFNKFCENNGI 179
            A+RFC++YLL++KD++L  F  +KTEVENQLDKKIK +RSDRGGEY S  F+++C+  GI
Sbjct: 536  ATRFCYIYLLRTKDEALEHFKIYKTEVENQLDKKIKRLRSDRGGEYLSNLFDEYCKECGI 595

Query: 180  VHETTAPYAPQSNGIAERKNRTLKDMINSMINSSGASMNLWGEALLTACYILNKIPFKDT 359
            +HETTAPY+PQSNG+AERKNRT+ D+ N+++ SSG     WGEA+LT CY+LN++P ++ 
Sbjct: 596  IHETTAPYSPQSNGVAERKNRTVCDLANALLQSSGMPDIWWGEAVLTVCYVLNRVPPRNR 655

Query: 360  DKTPYEMWKNRTPSYKFFKVWGCLAKVSIPTPKRTKLGPKTVDCVFIGYAQNSSAYRFLV 539
            + TPYE +K R P     + WGCLAKV++P PK+ KLGPKTVDCVF+GYA NS+AYRFLV
Sbjct: 656  EATPYEGFKGRKPDLSHLRTWGCLAKVNVPLPKKRKLGPKTVDCVFLGYAHNSAAYRFLV 715

Query: 540  FKSKNKSVDDNTIIESRDAVFFEDKFPFIER---SGGTPSSSTLAPRVREDSSAEDEIEL 710
              S+   +  N I+ESRD  FFE  FP  ++   +   PS +   P    D +   ++EL
Sbjct: 716  VHSETSEIAVNVIMESRDVTFFESIFPMRDKEVVAPDGPSRTYSLPSSVNDQT--PDLEL 773

Query: 711  RRSKRPRTNTSFGPDFLTFLVEDDPQTYLEAMSSSDAIFWREAILSEYESIITNNTWELV 890
            RRSKR RT  S G D++ +LV+++P++  EA +S DA +WREA+LSE +SII+N TWE+ 
Sbjct: 774  RRSKRQRTEKSLGDDYIIYLVDEEPRSLTEAYTSPDAEYWREAVLSEMDSIISNGTWEIT 833

Query: 891  ELPPGCKTIGNKWLFRKKLKADGSIDKYKARL 986
            +LP GCK +G KW+FR+K + DG+I+KYKARL
Sbjct: 834  DLPAGCKPVGCKWIFRRKRRPDGTIEKYKARL 865


>emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa Japonica Group]
          Length = 1320

 Score =  378 bits (971), Expect = e-102
 Identities = 186/340 (54%), Positives = 245/340 (72%), Gaps = 12/340 (3%)
 Frame = +3

Query: 3    ASRFCHVYLLKSKDDSLAKFISFKTEVENQLDKKIKIVRSDRGGEY-SGPFNKFCENNGI 179
            A+RFC+VYLLK+KD++L  F  +K EVENQLD+KIK +RSDRGGE+ S  F+ FCE +GI
Sbjct: 519  ATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGI 578

Query: 180  VHETTAPYAPQSNGIAERKNRTLKDMINSMINSSGASMNLWGEALLTACYILNKIPFKDT 359
            +HE T PY+P+SNGIAERKNRTL D++N+M++++G     WGEALLT+ ++LN++P ++ 
Sbjct: 579  IHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNK 638

Query: 360  DKTPYEMWKNRTPSYKFFKVWGCLAKVSIPTPKRTKLGPKTVDCVFIGYAQNSSAYRFLV 539
            DKTPYE+W  R PS  + ++WGCLAKV++P  K+ KLGPKTVDCVF+GYA +S AYRFL+
Sbjct: 639  DKTPYEIWIGRKPSLSYLRIWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLI 698

Query: 540  FKSKNKSVDDNTIIESRDAVFFEDKFPFIERSGGTPSSSTLAP----------RVREDSS 689
             KS+   +   TIIESRDA FFE  FP  +   G+   S + P             E  S
Sbjct: 699  VKSEVLDMHVGTIIESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVS 758

Query: 690  AEDEIEL-RRSKRPRTNTSFGPDFLTFLVEDDPQTYLEAMSSSDAIFWREAILSEYESII 866
             ED  E  RRSKR RT  SFG DF  +LV+D P++  EA +S DA +W+EA+ SE +SII
Sbjct: 759  EEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSII 818

Query: 867  TNNTWELVELPPGCKTIGNKWLFRKKLKADGSIDKYKARL 986
             N TWE+ E P GCK +G KW+F+KKL+ DG+I+KYKARL
Sbjct: 819  ANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARL 858


>gb|ABA94191.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1060

 Score =  378 bits (970), Expect = e-102
 Identities = 185/340 (54%), Positives = 246/340 (72%), Gaps = 12/340 (3%)
 Frame = +3

Query: 3    ASRFCHVYLLKSKDDSLAKFISFKTEVENQLDKKIKIVRSDRGGEY-SGPFNKFCENNGI 179
            A+RFC+VYLLK+KD++L  F  +K EVENQLD+KIK +RSDRGGE+ S  F+ FCE +GI
Sbjct: 387  ATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGI 446

Query: 180  VHETTAPYAPQSNGIAERKNRTLKDMINSMINSSGASMNLWGEALLTACYILNKIPFKDT 359
            +HE T PY+P+SNGIAERKNRTL D++N+M++++G     WGEALLT+ ++LN++P ++ 
Sbjct: 447  IHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNK 506

Query: 360  DKTPYEMWKNRTPSYKFFKVWGCLAKVSIPTPKRTKLGPKTVDCVFIGYAQNSSAYRFLV 539
            DKTPYE+W  R PS  + + WGCLAKV++P  K+ KLGPKTVDCVF+GYA +S AYRFL+
Sbjct: 507  DKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAYHSIAYRFLI 566

Query: 540  FKSKNKSVDDNTIIESRDAVFFEDKFPFIERSGGTPSSSTLAP----------RVREDSS 689
             KS+   ++  TI+ESRDA+FFE  FP  +   G+   S + P             E  S
Sbjct: 567  VKSEVPDMNVGTIMESRDAIFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVS 626

Query: 690  AEDEIEL-RRSKRPRTNTSFGPDFLTFLVEDDPQTYLEAMSSSDAIFWREAILSEYESII 866
             ED  E  RRSKR RT  SFG DF  +LV+D P++  EA +S DA +W+EA+ SE +SII
Sbjct: 627  EEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSII 686

Query: 867  TNNTWELVELPPGCKTIGNKWLFRKKLKADGSIDKYKARL 986
             N TWE+ E P GCK +G KW+F+KKL+ DG+I+KYKARL
Sbjct: 687  ANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARL 726