BLASTX nr result
ID: Coptis23_contig00022297
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00022297
(331 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_001062158.1| Os08g0500600 [Oryza sativa Japonica Group] g... 145 3e-33
gb|EAZ43233.1| hypothetical protein OsJ_27833 [Oryza sativa Japo... 145 3e-33
gb|EAZ07511.1| hypothetical protein OsI_29767 [Oryza sativa Indi... 145 3e-33
ref|XP_003572348.1| PREDICTED: pentatricopeptide repeat-containi... 141 6e-32
ref|XP_002445933.1| hypothetical protein SORBIDRAFT_07g028280 [S... 135 3e-30
>ref|NP_001062158.1| Os08g0500600 [Oryza sativa Japonica Group]
gi|42407356|dbj|BAD08817.1| pentatricopeptide (PPR)
repeat-containing protein-like [Oryza sativa Japonica
Group] gi|42407750|dbj|BAD08896.1| pentatricopeptide
(PPR) repeat-containing protein-like [Oryza sativa
Japonica Group] gi|113624127|dbj|BAF24072.1|
Os08g0500600 [Oryza sativa Japonica Group]
Length = 429
Score = 145 bits (367), Expect = 3e-33
Identities = 66/112 (58%), Positives = 89/112 (79%), Gaps = 2/112 (1%)
Frame = +1
Query: 1 QKVFDEC-GSLDIVSWNSLIDGYVKLGVLDMARRLFDKMPERNEVSWTAIISGYAKKGDL 177
++VF C G D+VSWN++I GYVK G ++ A+R+FD+MP RN VSW+ ++ GYA G+L
Sbjct: 12 REVFGSCAGVADVVSWNTVIGGYVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGEL 71
Query: 178 DVAKSLFERMP-VCRNTVTWNSMISGFAKSGFVSLARKMFDEMPERNIVSWN 330
DVA+ +F+RMP + RN VTWNSM++GFA+ G + LARKMFDEMP RN+VSWN
Sbjct: 72 DVAREMFDRMPAIGRNVVTWNSMVTGFARHGLLPLARKMFDEMPVRNLVSWN 123
Score = 87.8 bits (216), Expect = 8e-16
Identities = 42/112 (37%), Positives = 74/112 (66%), Gaps = 2/112 (1%)
Frame = +1
Query: 1 QKVFDECGSL--DIVSWNSLIDGYVKLGVLDMARRLFDKMPERNEVSWTAIISGYAKKGD 174
+++FD ++ ++V+WNS++ G+ + G+L +AR++FD+MP RN VSW A++ GY+ D
Sbjct: 75 REMFDRMPAIGRNVVTWNSMVTGFARHGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSD 134
Query: 175 LDVAKSLFERMPVCRNTVTWNSMISGFAKSGFVSLARKMFDEMPERNIVSWN 330
+D A+ LF+ MP ++ V+W MISG+A++G ++F M + V N
Sbjct: 135 MDGARELFDVMPE-KDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPN 185
>gb|EAZ43233.1| hypothetical protein OsJ_27833 [Oryza sativa Japonica Group]
Length = 567
Score = 145 bits (367), Expect = 3e-33
Identities = 66/112 (58%), Positives = 89/112 (79%), Gaps = 2/112 (1%)
Frame = +1
Query: 1 QKVFDEC-GSLDIVSWNSLIDGYVKLGVLDMARRLFDKMPERNEVSWTAIISGYAKKGDL 177
++VF C G D+VSWN++I GYVK G ++ A+R+FD+MP RN VSW+ ++ GYA G+L
Sbjct: 150 REVFGSCAGVADVVSWNTVIGGYVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGEL 209
Query: 178 DVAKSLFERMP-VCRNTVTWNSMISGFAKSGFVSLARKMFDEMPERNIVSWN 330
DVA+ +F+RMP + RN VTWNSM++GFA+ G + LARKMFDEMP RN+VSWN
Sbjct: 210 DVAREMFDRMPAIGRNVVTWNSMVTGFARHGLLPLARKMFDEMPVRNLVSWN 261
Score = 87.8 bits (216), Expect = 8e-16
Identities = 42/112 (37%), Positives = 74/112 (66%), Gaps = 2/112 (1%)
Frame = +1
Query: 1 QKVFDECGSL--DIVSWNSLIDGYVKLGVLDMARRLFDKMPERNEVSWTAIISGYAKKGD 174
+++FD ++ ++V+WNS++ G+ + G+L +AR++FD+MP RN VSW A++ GY+ D
Sbjct: 213 REMFDRMPAIGRNVVTWNSMVTGFARHGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSD 272
Query: 175 LDVAKSLFERMPVCRNTVTWNSMISGFAKSGFVSLARKMFDEMPERNIVSWN 330
+D A+ LF+ MP ++ V+W MISG+A++G ++F M + V N
Sbjct: 273 MDGARELFDVMPE-KDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPN 323
>gb|EAZ07511.1| hypothetical protein OsI_29767 [Oryza sativa Indica Group]
Length = 567
Score = 145 bits (367), Expect = 3e-33
Identities = 66/112 (58%), Positives = 89/112 (79%), Gaps = 2/112 (1%)
Frame = +1
Query: 1 QKVFDEC-GSLDIVSWNSLIDGYVKLGVLDMARRLFDKMPERNEVSWTAIISGYAKKGDL 177
++VF C G D+VSWN++I GYVK G ++ A+R+FD+MP RN VSW+ ++ GYA G+L
Sbjct: 150 REVFGSCAGVADVVSWNTVIGGYVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGEL 209
Query: 178 DVAKSLFERMP-VCRNTVTWNSMISGFAKSGFVSLARKMFDEMPERNIVSWN 330
DVA+ +F+RMP + RN VTWNSM++GFA+ G + LARKMFDEMP RN+VSWN
Sbjct: 210 DVAREMFDRMPAIGRNVVTWNSMVTGFARHGLLPLARKMFDEMPVRNLVSWN 261
Score = 87.8 bits (216), Expect = 8e-16
Identities = 42/112 (37%), Positives = 74/112 (66%), Gaps = 2/112 (1%)
Frame = +1
Query: 1 QKVFDECGSL--DIVSWNSLIDGYVKLGVLDMARRLFDKMPERNEVSWTAIISGYAKKGD 174
+++FD ++ ++V+WNS++ G+ + G+L +AR++FD+MP RN VSW A++ GY+ D
Sbjct: 213 REMFDRMPAIGRNVVTWNSMVTGFARHGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSD 272
Query: 175 LDVAKSLFERMPVCRNTVTWNSMISGFAKSGFVSLARKMFDEMPERNIVSWN 330
+D A+ LF+ MP ++ V+W MISG+A++G ++F M + V N
Sbjct: 273 MDGARELFDVMPE-KDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPN 323
>ref|XP_003572348.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Brachypodium distachyon]
Length = 555
Score = 141 bits (355), Expect = 6e-32
Identities = 64/112 (57%), Positives = 89/112 (79%), Gaps = 2/112 (1%)
Frame = +1
Query: 1 QKVFDEC-GSLDIVSWNSLIDGYVKLGVLDMARRLFDKMPERNEVSWTAIISGYAKKGDL 177
++VFD C G D+V+WN+++ GYVK G + ARR+F++MP+RN VSW+A++ YA G+L
Sbjct: 134 REVFDSCAGVADLVTWNTMLGGYVKCGEIGEARRVFEQMPQRNGVSWSAMVGAYAGAGEL 193
Query: 178 DVAKSLFERMP-VCRNTVTWNSMISGFAKSGFVSLARKMFDEMPERNIVSWN 330
DVA+ +F+ MP + RN V+WNSMI+GFA+ G + LARKMFDEMP RN+VSWN
Sbjct: 194 DVAREMFDEMPAIGRNVVSWNSMITGFARHGLLPLARKMFDEMPVRNLVSWN 245
Score = 90.9 bits (224), Expect = 1e-16
Identities = 43/109 (39%), Positives = 75/109 (68%), Gaps = 2/109 (1%)
Frame = +1
Query: 1 QKVFDECGSL--DIVSWNSLIDGYVKLGVLDMARRLFDKMPERNEVSWTAIISGYAKKGD 174
+++FDE ++ ++VSWNS+I G+ + G+L +AR++FD+MP RN VSW ++ GYA G+
Sbjct: 197 REMFDEMPAIGRNVVSWNSMITGFARHGLLPLARKMFDEMPVRNLVSWNTMVRGYAVNGE 256
Query: 175 LDVAKSLFERMPVCRNTVTWNSMISGFAKSGFVSLARKMFDEMPERNIV 321
++ A+ LF+RMP ++ V+W MISG+A++ + ++F M + V
Sbjct: 257 MNDARELFDRMPE-KDVVSWTCMISGYAQARCYTETLELFRAMQSESNV 304
>ref|XP_002445933.1| hypothetical protein SORBIDRAFT_07g028280 [Sorghum bicolor]
gi|241942283|gb|EES15428.1| hypothetical protein
SORBIDRAFT_07g028280 [Sorghum bicolor]
Length = 498
Score = 135 bits (341), Expect = 3e-30
Identities = 61/110 (55%), Positives = 83/110 (75%), Gaps = 2/110 (1%)
Frame = +1
Query: 7 VFDECGSL-DIVSWNSLIDGYVKLGVLDMARRLFDKMPERNEVSWTAIISGYAKKGDLDV 183
VF+ C + D+VSWN+++ GY K G + ARR+FD+MP RN VSW+ ++ YA G+LDV
Sbjct: 150 VFESCAEVADVVSWNTVVFGYAKCGEIGNARRVFDEMPHRNGVSWSVMVGAYAAAGELDV 209
Query: 184 AKSLFERMP-VCRNTVTWNSMISGFAKSGFVSLARKMFDEMPERNIVSWN 330
A+ +F+RMP + RN +TWN M++GF + G + LARKMFDEMP RNIVSWN
Sbjct: 210 AREMFDRMPAIGRNIITWNLMVTGFGRHGLLPLARKMFDEMPIRNIVSWN 259
Score = 89.4 bits (220), Expect = 3e-16
Identities = 41/103 (39%), Positives = 73/103 (70%), Gaps = 2/103 (1%)
Frame = +1
Query: 1 QKVFDECGSL--DIVSWNSLIDGYVKLGVLDMARRLFDKMPERNEVSWTAIISGYAKKGD 174
+++FD ++ +I++WN ++ G+ + G+L +AR++FD+MP RN VSW A++ GYA G+
Sbjct: 211 REMFDRMPAIGRNIITWNLMVTGFGRHGLLPLARKMFDEMPIRNIVSWNAMLRGYAMNGE 270
Query: 175 LDVAKSLFERMPVCRNTVTWNSMISGFAKSGFVSLARKMFDEM 303
+DVA+ LF+ MP ++ V+W MISG+A++G + ++F M
Sbjct: 271 MDVARELFDVMPE-KDVVSWTCMISGYAQAGRYAQTLELFRTM 312
Score = 54.7 bits (130), Expect = 8e-06
Identities = 24/63 (38%), Positives = 41/63 (65%)
Frame = +1
Query: 142 AIISGYAKKGDLDVAKSLFERMPVCRNTVTWNSMISGFAKSGFVSLARKMFDEMPERNIV 321
++++ YA D +++FE + V+WN+++ G+AK G + AR++FDEMP RN V
Sbjct: 133 SLLAMYAAFRDTASMRAVFESCAEVADVVSWNTVVFGYAKCGEIGNARRVFDEMPHRNGV 192
Query: 322 SWN 330
SW+
Sbjct: 193 SWS 195