BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00022289
         (1705 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN72416.1| hypothetical protein VITISV_027905 [Vitis vinifera]   624   e-176
ref|XP_003626608.1| Pentatricopeptide repeat-containing protein ...   610   e-172
ref|XP_002320901.1| predicted protein [Populus trichocarpa] gi|2...   602   e-169
ref|XP_004138384.1| PREDICTED: pentatricopeptide repeat-containi...   548   e-153
ref|NP_001154199.1| uncharacterized protein [Arabidopsis thalian...   538   e-150

>emb|CAN72416.1| hypothetical protein VITISV_027905 [Vitis vinifera]
          Length = 422

 Score =  624 bits (1610), Expect = e-176
 Identities = 302/415 (72%), Positives = 353/415 (85%)
 Frame = +1

Query: 118  SEIGSPARIQKLISNQTDPLLAKEIFDLASLQPNFRHSYSSFHTLIIKLGRSRHFTLMQS 297
            S IGSP+R+QKLI++Q+DPLLAKEIFDLASLQPNF+HSYSSFH LI+KLG +R F+LMQ 
Sbjct: 9    SPIGSPSRVQKLIASQSDPLLAKEIFDLASLQPNFKHSYSSFHILILKLGWARQFSLMQD 68

Query: 298  LLTRLKSDNYPVTPGLFSNLIQIYSDANLPDKALNTFYLMLEFNCKPLPKHLNKLIQVLV 477
            LL RLKS+ Y + P LFS++I+IY +ANLPD+AL TF+ ML+F+ KPLPKHLN L+Q+LV
Sbjct: 69   LLMRLKSEQYSINPSLFSDIIEIYGEANLPDQALKTFHSMLQFHSKPLPKHLNXLLQLLV 128

Query: 478  SHRGYLRPAFDLFKTAVTKFGIVPNTNTYNILMRAFCLNGDLSIAYTLFNKMFKRDIEPD 657
            SHR Y+RPAFDLFK+A  ++G+ P+T +YNILM AFC NGDLSIAYTLFN+MFKRD+ PD
Sbjct: 129  SHRNYIRPAFDLFKSA-HRYGVSPDTKSYNILMSAFCFNGDLSIAYTLFNQMFKRDVAPD 187

Query: 658  VESYRILMQGLCRKSQVNTAVSLLEDMLNKGYVPDTLSYTTLLNSLCRKKKLREAYKLLC 837
            VESYRILMQGLCRKSQVN AV LLEDMLNKGYVPD LSYTTLLNSLCRKKKL+EAYKLLC
Sbjct: 188  VESYRILMQGLCRKSQVNRAVDLLEDMLNKGYVPDALSYTTLLNSLCRKKKLKEAYKLLC 247

Query: 838  RMKVKGCNPDIVHYNTVILGFCRERRAGDAIKVIEDMPENGCIPNLVSYRTLVNGLCSQG 1017
            RMKVKGCNPDIVHYNTVILGFCRE R  DA KV+EDMP NGC PNL+SY TLV+GLC QG
Sbjct: 248  RMKVKGCNPDIVHYNTVILGFCREGRXLDACKVLEDMPSNGCSPNLMSYGTLVSGLCDQG 307

Query: 1018 MLDEAKAYLEEMISKGFVPHFSAFHGLVKGFCNVGRMEEACFVLEEMLRHGEVPHTETWV 1197
            + DEAK Y+EEM+SKGF PHFS FH L+ GFCNVG++EEAC VL EMLRHGE  HTETWV
Sbjct: 308  LYDEAKNYVEEMLSKGFSPHFSVFHALINGFCNVGKLEEACEVLXEMLRHGEAXHTETWV 367

Query: 1198 TIVRRICCEGESMEMERILQNVLKIEITRDAKIVDLGQGLEEFLIRKVQAKSWKA 1362
             I+ RIC   + + ME I    LK+EIT + ++V+ G GLEE++IRKV+ KS KA
Sbjct: 368  AIIPRICEVDKLVRMENIFDEXLKLEITPNTRLVEAGIGLEEYVIRKVRDKSRKA 422


>ref|XP_003626608.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|87240852|gb|ABD32710.1| Tetratricopeptide-like helical
            [Medicago truncatula] gi|355501623|gb|AES82826.1|
            Pentatricopeptide repeat-containing protein [Medicago
            truncatula]
          Length = 451

 Score =  610 bits (1574), Expect = e-172
 Identities = 296/413 (71%), Positives = 350/413 (84%), Gaps = 1/413 (0%)
 Frame = +1

Query: 118  SEIGSPARIQKLISNQTDPLLAKEIFDLASLQPNFRHSYSSFHTLIIKLGRSRHFTLMQS 297
            S IGSP R+QKLI++Q+DPLLAKEIFD ASLQPNFRH+YS++  LI+K GRS+HF+L+  
Sbjct: 37   SPIGSPTRVQKLIASQSDPLLAKEIFDYASLQPNFRHNYSTYLILILKFGRSKHFSLLDD 96

Query: 298  LLTRLKSDN-YPVTPGLFSNLIQIYSDANLPDKALNTFYLMLEFNCKPLPKHLNKLIQVL 474
            LL RLKS++  P+TP LFS LI+IY +ANLPDKALNTFY+ML+FN KPL KHLN+++ +L
Sbjct: 97   LLRRLKSESSQPITPTLFSYLIKIYGEANLPDKALNTFYIMLQFNIKPLTKHLNRILDIL 156

Query: 475  VSHRGYLRPAFDLFKTAVTKFGIVPNTNTYNILMRAFCLNGDLSIAYTLFNKMFKRDIEP 654
            VSHR YLRPAFDLFK A  K G+ P+T +YNILMRAFCLNGD+SIAYTLFNKMFKRD+ P
Sbjct: 157  VSHRNYLRPAFDLFKDA-HKHGVFPDTKSYNILMRAFCLNGDISIAYTLFNKMFKRDVVP 215

Query: 655  DVESYRILMQGLCRKSQVNTAVSLLEDMLNKGYVPDTLSYTTLLNSLCRKKKLREAYKLL 834
            D++SYRILMQ LCRKSQVN AV L EDMLNKG+VPD+ +YTTLLNSLCRKKKLREAYKLL
Sbjct: 216  DIQSYRILMQALCRKSQVNGAVDLFEDMLNKGFVPDSFTYTTLLNSLCRKKKLREAYKLL 275

Query: 835  CRMKVKGCNPDIVHYNTVILGFCRERRAGDAIKVIEDMPENGCIPNLVSYRTLVNGLCSQ 1014
            CRMKVKGCNPDIVHYNTVILGFCRE RA DA KVI+DM  NGC+PNLVSYRTLVNGLC  
Sbjct: 276  CRMKVKGCNPDIVHYNTVILGFCREGRAHDACKVIDDMQANGCLPNLVSYRTLVNGLCHL 335

Query: 1015 GMLDEAKAYLEEMISKGFVPHFSAFHGLVKGFCNVGRMEEACFVLEEMLRHGEVPHTETW 1194
            GMLDEA  Y+EEM+SKGF PHF+  H LVKGFCNVGR+EEAC VL + L H E PH +TW
Sbjct: 336  GMLDEATKYVEEMLSKGFSPHFAVIHALVKGFCNVGRIEEACGVLTKSLEHREAPHKDTW 395

Query: 1195 VTIVRRICCEGESMEMERILQNVLKIEITRDAKIVDLGQGLEEFLIRKVQAKS 1353
            + IV +IC   + ++++ +L+ VLKIEI  D +IVD G GLE++LIRK++AKS
Sbjct: 396  MIIVPQICEVDDGVKIDGVLEEVLKIEIKGDTRIVDAGIGLEDYLIRKIRAKS 448


>ref|XP_002320901.1| predicted protein [Populus trichocarpa] gi|222861674|gb|EEE99216.1|
            predicted protein [Populus trichocarpa]
          Length = 475

 Score =  602 bits (1551), Expect = e-169
 Identities = 287/419 (68%), Positives = 347/419 (82%)
 Frame = +1

Query: 103  NRKPISEIGSPARIQKLISNQTDPLLAKEIFDLASLQPNFRHSYSSFHTLIIKLGRSRHF 282
            N    S IGSP+R+QKLI++Q+DPLLAKEIFD AS QPNF+HSYSS+  LI+KLGR+++F
Sbjct: 57   NANTKSPIGSPSRVQKLIASQSDPLLAKEIFDYASRQPNFQHSYSSYLILILKLGRAKYF 116

Query: 283  TLMQSLLTRLKSDNYPVTPGLFSNLIQIYSDANLPDKALNTFYLMLEFNCKPLPKHLNKL 462
            + +  LLT LKS NYPVTP LFS +I IY +ANLPDKAL  FY +L+F+C P PKHLN +
Sbjct: 117  SFIDDLLTDLKSKNYPVTPTLFSYIINIYGEANLPDKALKIFYTILKFDCNPSPKHLNGI 176

Query: 463  IQVLVSHRGYLRPAFDLFKTAVTKFGIVPNTNTYNILMRAFCLNGDLSIAYTLFNKMFKR 642
            +++LVSH+ Y++PAFDLFK A T + + PNT +YNIL+RAFCLNG +S+AY+LFN+MFKR
Sbjct: 177  LEILVSHQNYIKPAFDLFKDAHT-YDVFPNTKSYNILIRAFCLNGQISMAYSLFNQMFKR 235

Query: 643  DIEPDVESYRILMQGLCRKSQVNTAVSLLEDMLNKGYVPDTLSYTTLLNSLCRKKKLREA 822
            D+ PDVESYRILMQ LCRKSQVN AV LLEDMLNKGYVPD LSYTTLLNSLCRKKKLREA
Sbjct: 236  DVMPDVESYRILMQALCRKSQVNGAVDLLEDMLNKGYVPDALSYTTLLNSLCRKKKLREA 295

Query: 823  YKLLCRMKVKGCNPDIVHYNTVILGFCRERRAGDAIKVIEDMPENGCIPNLVSYRTLVNG 1002
            YKLLCRMKVKGCNPDI+HYNTVILGFCRE RA DA KV+EDM  NGC+PNLVSYRTLV G
Sbjct: 296  YKLLCRMKVKGCNPDIIHYNTVILGFCREGRAMDACKVLEDMESNGCMPNLVSYRTLVGG 355

Query: 1003 LCSQGMLDEAKAYLEEMISKGFVPHFSAFHGLVKGFCNVGRMEEACFVLEEMLRHGEVPH 1182
            LC QGM DEAK++LEEM+ KGF PHF+  + L+KGFCNVG++EEAC V+EE+L+HGE PH
Sbjct: 356  LCDQGMFDEAKSHLEEMMMKGFSPHFAVSNALIKGFCNVGKIEEACGVVEELLKHGEAPH 415

Query: 1183 TETWVTIVRRICCEGESMEMERILQNVLKIEITRDAKIVDLGQGLEEFLIRKVQAKSWK 1359
            TETWV +V RIC   +   +  IL  V K+E+  D +IV+ G GLEE+LI++ Q K+W+
Sbjct: 416  TETWVMMVSRICEVDDLQRIGEILDKVKKVELKGDTRIVEAGIGLEEYLIKRTQQKAWR 474


>ref|XP_004138384.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01400,
            mitochondrial-like [Cucumis sativus]
            gi|449499186|ref|XP_004160743.1| PREDICTED:
            pentatricopeptide repeat-containing protein At4g01400,
            mitochondrial-like [Cucumis sativus]
          Length = 482

 Score =  548 bits (1413), Expect = e-153
 Identities = 262/413 (63%), Positives = 327/413 (79%)
 Frame = +1

Query: 109  KPISEIGSPARIQKLISNQTDPLLAKEIFDLASLQPNFRHSYSSFHTLIIKLGRSRHFTL 288
            +P   IGSP R+QKLI++Q+DPLLAKEIFD A  QP+FR S SS   LI+KLGRS++F+L
Sbjct: 65   QPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSLLVLILKLGRSKYFSL 124

Query: 289  MQSLLTRLKSDNYPVTPGLFSNLIQIYSDANLPDKALNTFYLMLEFNCKPLPKHLNKLIQ 468
            +  LL   KS  YPVTP  FS +I+IY +A+LPDKAL  FY M++F C P  K LN++++
Sbjct: 125  IDDLLLSFKSRRYPVTPTAFSYIIKIYGEADLPDKALKVFYTMIDFGCTPSSKQLNRILE 184

Query: 469  VLVSHRGYLRPAFDLFKTAVTKFGIVPNTNTYNILMRAFCLNGDLSIAYTLFNKMFKRDI 648
            +LVSHR ++RPAFDLFK A    G++PNT +YNIL+RAFC NG++SIAYTLFNKMF+R++
Sbjct: 185  ILVSHRNFIRPAFDLFKNA-RHHGVLPNTKSYNILIRAFCWNGNISIAYTLFNKMFERNV 243

Query: 649  EPDVESYRILMQGLCRKSQVNTAVSLLEDMLNKGYVPDTLSYTTLLNSLCRKKKLREAYK 828
             PDVE+YR LMQGLCRK+QVN AV LLEDMLNKGY+PDTLSY TLLNSLCRKKKLREAYK
Sbjct: 244  IPDVETYRTLMQGLCRKNQVNGAVDLLEDMLNKGYIPDTLSYATLLNSLCRKKKLREAYK 303

Query: 829  LLCRMKVKGCNPDIVHYNTVILGFCRERRAGDAIKVIEDMPENGCIPNLVSYRTLVNGLC 1008
            LLCRMKVKGCNPDI HYNTVI+GFCRE RA DA K++EDM  NGC+PNLVSY +L NGLC
Sbjct: 304  LLCRMKVKGCNPDIAHYNTVIMGFCREGRALDACKILEDMQSNGCLPNLVSYESLTNGLC 363

Query: 1009 SQGMLDEAKAYLEEMISKGFVPHFSAFHGLVKGFCNVGRMEEACFVLEEMLRHGEVPHTE 1188
             QGM + AK Y+EEM  KGF PHFS  H LVKGF ++GR+ E+C VLE+ML+ G+ PH++
Sbjct: 364  DQGMFELAKGYVEEMTLKGFYPHFSVIHALVKGFHSIGRIHESCSVLEDMLKRGKAPHSD 423

Query: 1189 TWVTIVRRICCEGESMEMERILQNVLKIEITRDAKIVDLGQGLEEFLIRKVQA 1347
            TW  I+  IC   ++ +   + + +LK ++ RD +IV+ G GL E+LIRK+QA
Sbjct: 424  TWEIIISGICEVEDTAKFCEVWEKILKKDVRRDTRIVEAGTGLGEYLIRKLQA 476


>ref|NP_001154199.1| uncharacterized protein [Arabidopsis thaliana]
            gi|223635643|sp|Q8LDU5.2|PP298_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At4g01400, mitochondrial; Flags: Precursor
            gi|332656621|gb|AEE82021.1| uncharacterized protein
            [Arabidopsis thaliana]
          Length = 466

 Score =  538 bits (1385), Expect = e-150
 Identities = 263/420 (62%), Positives = 332/420 (79%), Gaps = 5/420 (1%)
 Frame = +1

Query: 106  RKPI-----SEIGSPARIQKLISNQTDPLLAKEIFDLASLQPNFRHSYSSFHTLIIKLGR 270
            RKPI     S IGSP R+QKLI++Q+DPLLAKEIFD AS QPNFRHS SS   LI+KLGR
Sbjct: 37   RKPIVSNPKSPIGSPTRVQKLIASQSDPLLAKEIFDYASQQPNFRHSRSSHLILILKLGR 96

Query: 271  SRHFTLMQSLLTRLKSDNYPVTPGLFSNLIQIYSDANLPDKALNTFYLMLEFNCKPLPKH 450
             R+F L+  +L + +S  YP+T  +F+ LI++Y++A LP+K L+TFY MLEFN  P PKH
Sbjct: 97   GRYFNLIDDVLAKHRSSGYPLTGEIFTYLIKVYAEAKLPEKVLSTFYKMLEFNFTPQPKH 156

Query: 451  LNKLIQVLVSHRGYLRPAFDLFKTAVTKFGIVPNTNTYNILMRAFCLNGDLSIAYTLFNK 630
            LN+++ VLVSHRGYL+ AF+LFK++    G++PNT +YN+LM+AFCLN DLSIAY LF K
Sbjct: 157  LNRILDVLVSHRGYLQKAFELFKSS-RLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLFGK 215

Query: 631  MFKRDIEPDVESYRILMQGLCRKSQVNTAVSLLEDMLNKGYVPDTLSYTTLLNSLCRKKK 810
            M +RD+ PDV+SY+IL+QG CRK QVN A+ LL+DMLNKG+VPD LSYTTLLNSLCRK +
Sbjct: 216  MLERDVVPDVDSYKILIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQ 275

Query: 811  LREAYKLLCRMKVKGCNPDIVHYNTVILGFCRERRAGDAIKVIEDMPENGCIPNLVSYRT 990
            LREAYKLLCRMK+KGCNPD+VHYNT+ILGFCRE RA DA KV++DM  NGC PN VSYRT
Sbjct: 276  LREAYKLLCRMKLKGCNPDLVHYNTMILGFCREDRAMDARKVLDDMLSNGCSPNSVSYRT 335

Query: 991  LVNGLCSQGMLDEAKAYLEEMISKGFVPHFSAFHGLVKGFCNVGRMEEACFVLEEMLRHG 1170
            L+ GLC QGM DE K YLEEMISKGF PHFS  + LVKGFC+ G++EEAC V+E ++++G
Sbjct: 336  LIGGLCDQGMFDEGKKYLEEMISKGFSPHFSVSNCLVKGFCSFGKVEEACDVVEVVMKNG 395

Query: 1171 EVPHTETWVTIVRRICCEGESMEMERILQNVLKIEITRDAKIVDLGQGLEEFLIRKVQAK 1350
            E  H++TW  ++  IC E ES +++  L++ +K EIT D +IVD+G GL  +L  K+Q K
Sbjct: 396  ETLHSDTWEMVIPLICNEDESEKIKLFLEDAVKEEITGDTRIVDVGIGLGSYLSSKLQMK 455