BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00022288
         (867 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptas...    57   6e-12
gb|EEE66057.1| hypothetical protein OsJ_22054 [Oryza sativa Japo...    65   5e-11
ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medica...    52   1e-10
ref|XP_002307329.1| predicted protein [Populus trichocarpa] gi|2...    72   2e-10
gb|AFW82503.1| hypothetical protein ZEAMMB73_671392 [Zea mays]         72   2e-10

>gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
            [Medicago truncatula]
          Length = 869

 Score = 57.4 bits (137), Expect(2) = 6e-12
 Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 16/175 (9%)
 Frame = +3

Query: 288  FIGATVHEIWCERNRRKKKSILLTP------QQLTSRIMATMKLYFQK---NLSEVIDSY 440
            F   T  EIWC+      K+IL         +   +R M+   +  Q+   N++  +D  
Sbjct: 626  FFAVTDIEIWCKSGLIGSKAILFAAGLWWIWRSRNARCMSEESMLLQRLAANITYFVDDI 685

Query: 441  SLRALDDRLGLQMNFKPQEVL----WCRWKSAEQGAYMLNTDGSVQQNG--SGYGGTIRD 602
            +             F+P  V+    + +W ++     +LN DGS   +   +G+GG IR+
Sbjct: 686  N----------SCFFQPLPVMVSDRYVKWNNSNFNCTILNVDGSCIGSPIRAGFGGLIRN 735

Query: 603  SLGNVVRAYAG-CSSRNSVIHQEIQAIAVGLKQAQEMGIENLEVNSDSLGAINIL 764
            S+G  +  + G   S + ++  E+ AI  G+  A +MGI ++ V SDSL +IN++
Sbjct: 736  SVGFYLSGFLGFLPSSSDILLAELTAIYDGINTAIDMGITDMAVYSDSLLSINLI 790



 Score = 39.7 bits (91), Expect(2) = 6e-12
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +1

Query: 7   KFSFTLGQLLSNCLPTQDRLIQKKTLHFSECSLCGISSENSKHLFFDCHYSKQVW 171
           K+ F +     + LPT   L  ++ +  + C+ CG+S E+  H   DC +SK +W
Sbjct: 562 KYKFLIWLACHDSLPTAALLHHRQIIASATCARCGVSDESVFHCIRDCPFSKIIW 616


>gb|EEE66057.1| hypothetical protein OsJ_22054 [Oryza sativa Japonica Group]
          Length = 940

 Score = 64.7 bits (156), Expect(2) = 5e-11
 Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 6/205 (2%)
 Frame = +3

Query: 270  ADIFKAFIGATVHEIWCERNRRKKKSILLTPQQLTSRIMATMKLYFQKNLSEVIDSYSLR 449
            ++I K  +  T+  IW  RN  +    L  P+Q+  +I+A +         E+I+ +   
Sbjct: 716  SNIQKTALAVTLWHIWEARNHSRNNPTLANPRQVIQKILAYV---------EMIEQHCCC 766

Query: 450  ALDDRLGLQMNFKPQEVLWCRWKSAEQGAYMLNTDGSVQQ--NGSGYGGTIRDSLGNVVR 623
            A+    G  +   P      RW+   +G  ++NTD +V Q  N  G G   RD  G  + 
Sbjct: 767  AVQAVRGDALRPVP------RWRPPPEGTILINTDAAVFQSVNSFGLGFLFRDHSGLCLF 820

Query: 624  A----YAGCSSRNSVIHQEIQAIAVGLKQAQEMGIENLEVNSDSLGAINILKGSERSPWY 791
            A    ++GC         E  AI   L+ A E G + + + SD L  I  ++   R    
Sbjct: 821  AANERHSGCIQPEMA---EALAIRCALRTAMEEGHQKIVLASDCLAIIQKIQSGARDRSM 877

Query: 792  CSIMVACIRSITRAFVKCSFSHIFR 866
               +V+ I  +   F+ CSF H+ R
Sbjct: 878  VGALVSDINFLAAGFLDCSFIHVNR 902



 Score = 29.3 bits (64), Expect(2) = 5e-11
 Identities = 15/63 (23%), Positives = 30/63 (47%)
 Frame = +1

Query: 7   KFSFTLGQLLSNCLPTQDRLIQKKTLHFSECSLCGISSENSKHLFFDCHYSKQVWASVKT 186
           K    L +++ +CLP+  +L ++       C  C    +  +H+F  C ++  +W S+K 
Sbjct: 632 KMLTNLWRIVHDCLPSGFQLRRRHIPATDGCCFCE-RDDRIEHIFLLCPFAVCIWDSIKQ 690

Query: 187 ILD 195
             D
Sbjct: 691 HFD 693


>ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medicago truncatula]
           gi|355496705|gb|AES77908.1| Cytochrome c biogenesis
           protein ccsA [Medicago truncatula]
          Length = 666

 Score = 51.6 bits (122), Expect(2) = 1e-10
 Identities = 23/56 (41%), Positives = 35/56 (62%)
 Frame = +1

Query: 4   PKFSFTLGQLLSNCLPTQDRLIQKKTLHFSECSLCGISSENSKHLFFDCHYSKQVW 171
           P  SF   +LL N LPT + L ++  L  S C  C  S+E+S+H+FF+CH + ++W
Sbjct: 47  PSRSFITWRLLHNKLPTDENLRKRGCLIVSICCFCMKSAESSQHIFFECHVTSRLW 102



 Score = 41.2 bits (95), Expect(2) = 1e-10
 Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 8/180 (4%)
 Frame = +3

Query: 273 DIFKAFIGATVHEIWCERNRRKKKSILLTPQQLTSRIMATMKLYFQKNL---SEVIDSYS 443
           +I  + I  T+  IW ERN+R   +       L + I+A +K+ F   +   +  +  Y 
Sbjct: 135 NILNSAIIHTIWSIWIERNQRCFHNKHQAMTTLFNIILAEVKMSFSLCMIKGNSAMQDYK 194

Query: 444 LRALDDRLGLQMNFKPQEV---LWCRWKSAEQGAYMLNTDGS-VQQNGSG-YGGTIRDSL 608
           +  L       + FK + V   L   WK        +N DGS V ++  G  G  IRDS 
Sbjct: 195 VAKL-----FNIPFKVKRVTPHLDIIWKPPIGDIVKINCDGSSVGRHPCGSIGIVIRDSN 249

Query: 609 GNVVRAYAGCSSRNSVIHQEIQAIAVGLKQAQEMGIENLEVNSDSLGAINILKGSERSPW 788
            + + A +      + +  E  A  + +++AQEM + ++ + +DSL  +N        PW
Sbjct: 250 HHFLGAISSNIGNATPLEAEFCAGMMAMEKAQEMQLMHVCLETDSLKVVNAFNKGLGVPW 309


>ref|XP_002307329.1| predicted protein [Populus trichocarpa] gi|222856778|gb|EEE94325.1|
           predicted protein [Populus trichocarpa]
          Length = 329

 Score = 72.0 bits (175), Expect = 2e-10
 Identities = 40/125 (32%), Positives = 61/125 (48%)
 Frame = +3

Query: 492 QEVLWCRWKSAEQGAYMLNTDGSVQQNGSGYGGTIRDSLGNVVRAYAGCSSRNSVIHQEI 671
           + + WC+WK  + G   LNTDGS+    +G GG  RD  GN +  +   +S + +   E+
Sbjct: 160 RSIRWCQWKRPDFGWIKLNTDGSIDSENAGIGGLFRDYEGNAICGFVSKASGHDIFLVEL 219

Query: 672 QAIAVGLKQAQEMGIENLEVNSDSLGAINILKGSERSPWYCSIMVACIRSITRAFVKCSF 851
            AI  GL  A  + I+ L V SDSL  +N +   +         +  IR + + F K   
Sbjct: 220 WAIWRGLVLALNLHIQVLWVESDSLSVVNTINRQQPYSGKADACLKQIRLLLKKFKKHKV 279

Query: 852 SHIFR 866
           SH +R
Sbjct: 280 SHSWR 284


>gb|AFW82503.1| hypothetical protein ZEAMMB73_671392 [Zea mays]
          Length = 208

 Score = 71.6 bits (174), Expect = 2e-10
 Identities = 42/131 (32%), Positives = 67/131 (51%), Gaps = 3/131 (2%)
 Frame = +3

Query: 483 FKPQEVLWCRWKSAEQGAYMLNTDGSVQQNGSG---YGGTIRDSLGNVVRAYAGCSSRNS 653
           ++P  V+  +W    +G + LN DGSV  +GS     GG IRDS G VV A+A  +  ++
Sbjct: 29  YQPGRVILVKWSPPPRGWFKLNFDGSVYHDGSARASVGGVIRDSAGRVVLAFAEPTEHST 88

Query: 654 VIHQEIQAIAVGLKQAQEMGIENLEVNSDSLGAINILKGSERSPWYCSIMVACIRSITRA 833
           V   E +A+  GL+ A  + ++ L V  D L  + +L+G E      + +   I  + R 
Sbjct: 89  VGIVEARAMICGLRLALGLRLQRLVVEGDDLVLVQLLRGEETQTRIPAALHEEILGLLRC 148

Query: 834 FVKCSFSHIFR 866
           F  C   H++R
Sbjct: 149 FSGCDVRHVYR 159