BLASTX nr result
ID: Coptis23_contig00022205
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00022205
(910 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002527480.1| conserved hypothetical protein [Ricinus comm... 50 2e-13
emb|CBI40164.3| unnamed protein product [Vitis vinifera] 45 2e-10
ref|XP_002534512.1| conserved hypothetical protein [Ricinus comm... 45 2e-10
ref|NP_566277.2| F-box/kelch-repeat protein [Arabidopsis thalian... 55 3e-10
gb|AAF30317.1|AC018907_17 hypothetical protein [Arabidopsis thal... 55 3e-10
>ref|XP_002527480.1| conserved hypothetical protein [Ricinus communis]
gi|223533120|gb|EEF34878.1| conserved hypothetical
protein [Ricinus communis]
Length = 379
Score = 50.4 bits (119), Expect(3) = 2e-13
Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 7/114 (6%)
Frame = -1
Query: 826 YLSQEIMFNIFSRFPIQALSRCRFVCTE*NSFVNDPYLVNWHCS-QIDGVDPSFLIL--- 659
++ +E++ IF R P++ L RCR +C S +++ ++ H ID + ++LIL
Sbjct: 4 HIPKEVLIKIFLRLPVKQLLRCRCICKTWYSLISNHNFISTHSRYTIDSNNNNYLILRHY 63
Query: 658 ---GGEGRKLYLVDHENIHTSLKAIDIKLDLTPMNIEVVGSSNGLMCLCSLSYH 506
+ R D +++ + + +D L+ + E+VGS NG++CL H
Sbjct: 64 SRSNKKERFALHFDDDDMFSEYQELDFPLESSWDYFEIVGSCNGIICLTDNHSH 117
Score = 43.5 bits (101), Expect(3) = 2e-13
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Frame = -3
Query: 383 TTPLFLKGALHWKIYHLHHFNRASPDVKCIAAIDIGTEKFREFKQPPAQDDGTLGLLTEF 204
++ + L+GA+HW Y+ SP IA + E+F+EF+ P L L+
Sbjct: 208 SSQIVLEGAIHWVGYY-------SPRELTIAVYVVHDEEFKEFRMPDEISGTALQHLSVM 260
Query: 203 LC------MTNKNRDGHF-----DVWVMKDYGV--SWTKVY 120
LC + K R +WVM +YGV SWTK++
Sbjct: 261 LCCQLLSIIQYKKRGSRLCYESCCIWVMNEYGVHDSWTKLF 301
Score = 27.7 bits (60), Expect(3) = 2e-13
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 438 GFGFDATTNTYKIVLT*YNHT 376
GFGFD+ TN YK++ Y T
Sbjct: 150 GFGFDSRTNDYKVIRIVYYST 170
>emb|CBI40164.3| unnamed protein product [Vitis vinifera]
Length = 423
Score = 45.4 bits (106), Expect(3) = 2e-10
Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 13/111 (11%)
Frame = -3
Query: 398 FSHDTTTPLFLKGALHWKIYHLHHFNRASPDVKCIAAIDIGTEKFREFKQPP-------- 243
+ H + F+ GALHW + + I + D+ + F+E P
Sbjct: 213 YIHSNVSRTFINGALHWLAGKKNEMDNTD---NLILSFDMAKDVFKEIMLPDFGYDELIR 269
Query: 242 ---AQDDGTLGLLTEFLCMTNKNRDGHFDVWVMKDYGV--SWTKVYVIRKE 105
A G+L +L +N+N DVWVM++YGV SWTK + IR E
Sbjct: 270 KCLADYKGSLSVLFYDAYHSNEN----CDVWVMEEYGVAKSWTKHFTIRHE 316
Score = 42.4 bits (98), Expect(3) = 2e-10
Identities = 24/105 (22%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Frame = -1
Query: 814 EIMFNIFSRFPIQALSRCRFVCTE*NSFVNDPYLVNWHCSQIDGVDPSFLI---LGGEGR 644
E + +I R P++++ R R VC + +DP ++ H Q L+ L +
Sbjct: 23 ENLIDIHLRLPVKSIVRFRCVCKSWCTLFDDPDFISMHLRQASANSNGRLLFKHLSSSEQ 82
Query: 643 KLYLVDHENIHTSLKAIDIKLDLTPMNIEVVGSSNGLMCLCSLSY 509
++Y + ++ +++ + ++VGSSNGL+CL ++
Sbjct: 83 EIYSLRSNIAFAEVRRLEVPVPSKTDYYQIVGSSNGLICLTESNF 127
Score = 23.5 bits (49), Expect(3) = 2e-10
Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Frame = -2
Query: 513 PITKEILELPKATFC-YTGQLFKTTPGFGFDATTNTYKIV 397
P +E LPK +T L GF F N YK+V
Sbjct: 141 PAIREFQTLPKYHINNFTSPLMVVGLGFAFHPVINDYKVV 180
>ref|XP_002534512.1| conserved hypothetical protein [Ricinus communis]
gi|223525141|gb|EEF27869.1| conserved hypothetical
protein [Ricinus communis]
Length = 383
Score = 44.7 bits (104), Expect(3) = 2e-10
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Frame = -3
Query: 407 TKLFSHDTTTPLFLKGALHWKIYHLHHFNRASPDVKCIAAIDIGTEKFREFKQPPAQD-- 234
T + + + +++ G LHW + + R P K I+ D+ EKFRE P +
Sbjct: 205 TPYYPIHSPSQVYVNGRLHWVNWPV----RYRPGRKLIS-FDLEDEKFREVPLPGSDGIK 259
Query: 233 --DGTLGLLTEFLCMTNKNRDGHFDVWVMKDYGV--SWTKVYVI 114
D L ++ + L G F+VWVMKDYG+ SW K + I
Sbjct: 260 WGDYMLVVIRDCLSAAVYRNYGSFEVWVMKDYGLKESWIKEFSI 303
Score = 40.8 bits (94), Expect(3) = 2e-10
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
Frame = -1
Query: 823 LSQEIMFNIFSRFPIQALSRCRFVCTE*NSFVNDPYLVNWHCSQIDGVDPSFLILGGEGR 644
L +EIM +I SR +L +FVC + DP LV+ H S +P ++
Sbjct: 14 LPREIMADILSRVTTPSLFIIKFVCQSWRNLAQDPLLVDLHFSHKIENNPCLILHSDHPT 73
Query: 643 K--LYLVDHENIHTSLKAIDIKLDL-TPMNIEVVGSSNGLMCL 524
K LY + +TS + +K+ + + +VVGS G +CL
Sbjct: 74 KNQLYALCLYPHNTSQDGMVMKIPVPVKLEFDVVGSCKGWLCL 116
Score = 25.8 bits (55), Expect(3) = 2e-10
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -2
Query: 513 PITKEILELPKATFCYTGQLFKTTPGFGFDATTNTYKIVLT*Y 385
P T +ELP + F T GFGFD YK++ Y
Sbjct: 130 PFTNSCMELPISNFPSD---VWTVLGFGFDPVRKKYKVLKVSY 169
>ref|NP_566277.2| F-box/kelch-repeat protein [Arabidopsis thaliana]
gi|75151183|sp|Q8GXC7.1|FBK50_ARATH RecName:
Full=F-box/kelch-repeat protein At3g06240
gi|26451648|dbj|BAC42921.1| unknown protein [Arabidopsis
thaliana] gi|29824145|gb|AAP04033.1| putative F-box
protein family [Arabidopsis thaliana]
gi|332640843|gb|AEE74364.1| F-box/kelch-repeat protein
[Arabidopsis thaliana]
Length = 427
Score = 55.1 bits (131), Expect(3) = 3e-10
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 9/98 (9%)
Frame = -3
Query: 383 TTPLFLKGALHWKIYHLHHFNRASPDVKCIAAIDIGTEKFREFKQPPAQDDGT------- 225
T+ + GA+HW H R + A DI TE+FRE P +D +
Sbjct: 266 TSGVHFNGAIHWVFTESRHNQRV------VVAFDIQTEEFREMPVPDEAEDCSHRFSNFV 319
Query: 224 LGLLTEFLCMTNKNRDGHFDVWVMKDYG--VSWTKVYV 117
+G L LC+ N D H D+WVM +YG SW+++ +
Sbjct: 320 VGSLNGRLCVVNSCYDVHDDIWVMSEYGEAKSWSRIRI 357
Score = 30.0 bits (66), Expect(3) = 3e-10
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -1
Query: 562 IEVVGSSNGLMCLCSLSYHERDIGASQGHFLLYRPTI*D 446
+E+VGSSNGL+C I +G LY PT D
Sbjct: 163 VEIVGSSNGLVC----------ISPGEGAVFLYNPTTGD 191
Score = 25.4 bits (54), Expect(3) = 3e-10
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -2
Query: 444 TPGFGFDATTNTYKIV 397
T GFGFD T+ YK+V
Sbjct: 213 TYGFGFDGLTDDYKLV 228
>gb|AAF30317.1|AC018907_17 hypothetical protein [Arabidopsis thaliana]
gi|21536665|gb|AAM60997.1| unknown [Arabidopsis
thaliana]
Length = 416
Score = 55.1 bits (131), Expect(3) = 3e-10
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 9/98 (9%)
Frame = -3
Query: 383 TTPLFLKGALHWKIYHLHHFNRASPDVKCIAAIDIGTEKFREFKQPPAQDDGT------- 225
T+ + GA+HW H R + A DI TE+FRE P +D +
Sbjct: 255 TSGVHFNGAIHWVFTESRHNQRV------VVAFDIQTEEFREMPVPDEAEDCSHRFSNFV 308
Query: 224 LGLLTEFLCMTNKNRDGHFDVWVMKDYG--VSWTKVYV 117
+G L LC+ N D H D+WVM +YG SW+++ +
Sbjct: 309 VGSLNGRLCVVNSCYDVHDDIWVMSEYGEAKSWSRIRI 346
Score = 30.0 bits (66), Expect(3) = 3e-10
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -1
Query: 562 IEVVGSSNGLMCLCSLSYHERDIGASQGHFLLYRPTI*D 446
+E+VGSSNGL+C I +G LY PT D
Sbjct: 152 VEIVGSSNGLVC----------ISPGEGAVFLYNPTTGD 180
Score = 25.4 bits (54), Expect(3) = 3e-10
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -2
Query: 444 TPGFGFDATTNTYKIV 397
T GFGFD T+ YK+V
Sbjct: 202 TYGFGFDGLTDDYKLV 217