BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00022200
         (844 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276956.1| PREDICTED: DNA-directed RNA polymerase II su...   241   1e-61
ref|XP_004134242.1| PREDICTED: DNA-directed RNA polymerase II su...   237   3e-60
ref|XP_002976415.1| hypothetical protein SELMODRAFT_232741 [Sela...   236   6e-60
ref|XP_003594777.1| DNA-directed RNA polymerase II subunit RPB9 ...   235   1e-59
ref|NP_001235803.1| uncharacterized protein LOC100305979 [Glycin...   233   3e-59

>ref|XP_002276956.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9 [Vitis
           vinifera] gi|147769002|emb|CAN66735.1| hypothetical
           protein VITISV_024186 [Vitis vinifera]
           gi|296083263|emb|CBI22899.3| unnamed protein product
           [Vitis vinifera]
          Length = 114

 Score =  241 bits (616), Expect = 1e-61
 Identities = 107/114 (93%), Positives = 112/114 (98%)
 Frame = -1

Query: 796 MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEPADNNCVYRNEVHHSVGERTQVLQ 617
           MSTMKFCRECNNILYPKED+EQKILLYACRNCDHQE A+NNCVYRNE+HHSVGERTQVLQ
Sbjct: 1   MSTMKFCRECNNILYPKEDREQKILLYACRNCDHQEVAENNCVYRNEIHHSVGERTQVLQ 60

Query: 616 DVAADPTLPRTKSVRCTQCNHGEAVFFQATSRGEEGMTLFFVCCNPNCGFRWRD 455
           DVAADPTLPRTKSVRC QCNHGEAVFFQAT+RGEEGMTLFFVCCNPNCG+RWRD
Sbjct: 61  DVAADPTLPRTKSVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGYRWRD 114


>ref|XP_004134242.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like
           [Cucumis sativus] gi|449517969|ref|XP_004166016.1|
           PREDICTED: DNA-directed RNA polymerase II subunit
           RPB9-like [Cucumis sativus]
          Length = 114

 Score =  237 bits (604), Expect = 3e-60
 Identities = 104/114 (91%), Positives = 111/114 (97%)
 Frame = -1

Query: 796 MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEPADNNCVYRNEVHHSVGERTQVLQ 617
           MSTMKFCRECNNILYPKED+++KILLYACRNCDHQE ADNNCVYRNE+HH+VGERTQVLQ
Sbjct: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60

Query: 616 DVAADPTLPRTKSVRCTQCNHGEAVFFQATSRGEEGMTLFFVCCNPNCGFRWRD 455
           DVAADPTLPRTK+VRC QCNHGEAVFFQAT+RGEEGMTLFFVCCNPNCG RWRD
Sbjct: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114


>ref|XP_002976415.1| hypothetical protein SELMODRAFT_232741 [Selaginella moellendorffii]
           gi|302811122|ref|XP_002987251.1| hypothetical protein
           SELMODRAFT_125489 [Selaginella moellendorffii]
           gi|300145148|gb|EFJ11827.1| hypothetical protein
           SELMODRAFT_125489 [Selaginella moellendorffii]
           gi|300156045|gb|EFJ22675.1| hypothetical protein
           SELMODRAFT_232741 [Selaginella moellendorffii]
          Length = 115

 Score =  236 bits (601), Expect = 6e-60
 Identities = 104/114 (91%), Positives = 110/114 (96%)
 Frame = -1

Query: 796 MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEPADNNCVYRNEVHHSVGERTQVLQ 617
           MSTMKFCRECNNILYPKED++QKILLYACRNCDHQE ADNNCVYRNEVHHS GERTQVLQ
Sbjct: 1   MSTMKFCRECNNILYPKEDRDQKILLYACRNCDHQEVADNNCVYRNEVHHSAGERTQVLQ 60

Query: 616 DVAADPTLPRTKSVRCTQCNHGEAVFFQATSRGEEGMTLFFVCCNPNCGFRWRD 455
           DVA+DPTLPRTKSVRC +C HGEAVFFQAT+RGEEGMTLFFVCCNPNCG+RWRD
Sbjct: 61  DVASDPTLPRTKSVRCVRCKHGEAVFFQATTRGEEGMTLFFVCCNPNCGYRWRD 114


>ref|XP_003594777.1| DNA-directed RNA polymerase II subunit RPB9 [Medicago truncatula]
           gi|87240462|gb|ABD32320.1| DNA-directed RNA polymerase,
           subunit C11/M/9 [Medicago truncatula]
           gi|217075262|gb|ACJ85991.1| unknown [Medicago
           truncatula] gi|355483825|gb|AES65028.1| DNA-directed RNA
           polymerase II subunit RPB9 [Medicago truncatula]
           gi|388497558|gb|AFK36845.1| unknown [Medicago
           truncatula]
          Length = 114

 Score =  235 bits (599), Expect = 1e-59
 Identities = 105/114 (92%), Positives = 109/114 (95%)
 Frame = -1

Query: 796 MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEPADNNCVYRNEVHHSVGERTQVLQ 617
           MSTMKFCRECNNILYPKED+EQKILLYACRNCDHQE ADN CVYRNE+HHSV ERTQVLQ
Sbjct: 1   MSTMKFCRECNNILYPKEDREQKILLYACRNCDHQEAADNFCVYRNEIHHSVAERTQVLQ 60

Query: 616 DVAADPTLPRTKSVRCTQCNHGEAVFFQATSRGEEGMTLFFVCCNPNCGFRWRD 455
           DVAADPTLPRTK+VRC QCNHGEAVFFQAT+RGEEGMTLFFVCCNPNCG RWRD
Sbjct: 61  DVAADPTLPRTKAVRCVQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114


>ref|NP_001235803.1| uncharacterized protein LOC100305979 [Glycine max]
           gi|255627167|gb|ACU13928.1| unknown [Glycine max]
          Length = 114

 Score =  233 bits (595), Expect = 3e-59
 Identities = 103/114 (90%), Positives = 110/114 (96%)
 Frame = -1

Query: 796 MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEPADNNCVYRNEVHHSVGERTQVLQ 617
           MS MKFCRECNNILYPKED++QK+LL+ACRNCDHQE ADN CVYRNE+HHSVGERTQVLQ
Sbjct: 1   MSAMKFCRECNNILYPKEDRDQKVLLFACRNCDHQEVADNFCVYRNEIHHSVGERTQVLQ 60

Query: 616 DVAADPTLPRTKSVRCTQCNHGEAVFFQATSRGEEGMTLFFVCCNPNCGFRWRD 455
           DVAADPTLPRTKSVRC+QCNHGEAVFFQAT+RGEEGMTLFFVCCNPNCG RWRD
Sbjct: 61  DVAADPTLPRTKSVRCSQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114