BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00022179
         (642 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004152299.1| PREDICTED: pentatricopeptide repeat-containi...   213   3e-53
ref|XP_002327958.1| predicted protein [Populus trichocarpa] gi|2...   191   8e-47
ref|XP_003624339.1| Pentatricopeptide repeat-containing protein ...   187   2e-45
ref|XP_002531063.1| pentatricopeptide repeat-containing protein,...    63   5e-08
ref|XP_002280443.1| PREDICTED: pentatricopeptide repeat-containi...    59   6e-07

>ref|XP_004152299.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
           gi|449484825|ref|XP_004156991.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 579

 Score =  213 bits (541), Expect = 3e-53
 Identities = 107/166 (64%), Positives = 127/166 (76%), Gaps = 5/166 (3%)
 Frame = +3

Query: 159 APLTSSSSDV-GLICSLLSNDKSR----NLDNLLKGFKKKLDSNLVLQILTNYRHLGRRT 323
           +P T  SSDV   +CSLLSN   +    +LD+LLK FK  L S+ VLQIL NY+ LGR  
Sbjct: 57  SPNTLGSSDVVNSVCSLLSNKNPQTPNLDLDHLLKRFKDNLSSDFVLQILMNYKLLGRAK 116

Query: 324 TLEFFSWAGFEMGFCLEDSVIEYMADFLGRRKLFDDLKCLLKTVYLSKGCVSCRTVSVCI 503
           TLEFFSW+G +MGF  + SV+EYMADFLGRRKLFDD+KCLL TV   KG +SCRT S+CI
Sbjct: 117 TLEFFSWSGLQMGFRFDASVVEYMADFLGRRKLFDDMKCLLVTVLSHKGRISCRTFSICI 176

Query: 504 RFLGREGRIKDALCLFEEMEVELNCKPDNFVCNNMLYVLCKKETSG 641
           RFLGR+GR+++ALCLFEEME +  CKPDN V NNMLY LCKKE +G
Sbjct: 177 RFLGRQGRVREALCLFEEMEPKFGCKPDNLVFNNMLYALCKKEPTG 222


>ref|XP_002327958.1| predicted protein [Populus trichocarpa] gi|222837367|gb|EEE75746.1|
           predicted protein [Populus trichocarpa]
          Length = 484

 Score =  191 bits (486), Expect = 8e-47
 Identities = 87/126 (69%), Positives = 104/126 (82%)
 Frame = +3

Query: 264 LDSNLVLQILTNYRHLGRRTTLEFFSWAGFEMGFCLEDSVIEYMADFLGRRKLFDDLKCL 443
           L+S++VLQ+L NY+ LGR  TLEFFSWAG +MGF  +D VIEYM DFLGRRKLFDD+KC 
Sbjct: 2   LNSDIVLQVLMNYKQLGRVKTLEFFSWAGMQMGFKFDDCVIEYMVDFLGRRKLFDDMKCF 61

Query: 444 LKTVYLSKGCVSCRTVSVCIRFLGREGRIKDALCLFEEMEVELNCKPDNFVCNNMLYVLC 623
           L TV    G V+CR  S+CIRFLGR+GR ++ALCLF+EME + NC+PDNFV NNMLYVLC
Sbjct: 62  LMTVLFHNGRVTCRAFSICIRFLGRQGRFREALCLFQEMETKFNCRPDNFVYNNMLYVLC 121

Query: 624 KKETSG 641
           KK+TSG
Sbjct: 122 KKDTSG 127


>ref|XP_003624339.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355499354|gb|AES80557.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 578

 Score =  187 bits (474), Expect = 2e-45
 Identities = 92/164 (56%), Positives = 120/164 (73%), Gaps = 2/164 (1%)
 Frame = +3

Query: 153 AIAPLTSSSSDVGLICSLLS--NDKSRNLDNLLKGFKKKLDSNLVLQILTNYRHLGRRTT 326
           +I+ L+  ++   L+  L+S   D    +DN+L  +K +L S+LVL++L +Y HLGR  T
Sbjct: 59  SISNLSPKTTLYTLLTDLVSCPTDTDTAIDNVLDCYKAELTSDLVLRVLMSYNHLGRTKT 118

Query: 327 LEFFSWAGFEMGFCLEDSVIEYMADFLGRRKLFDDLKCLLKTVYLSKGCVSCRTVSVCIR 506
           L+FFSWAG +M F  +DSVIEYM DF GRRKLFDD+KCLL T+   KG VS + +S+CIR
Sbjct: 119 LKFFSWAGTKMDFQFDDSVIEYMVDFFGRRKLFDDIKCLLMTIVAHKGQVSSKALSICIR 178

Query: 507 FLGREGRIKDALCLFEEMEVELNCKPDNFVCNNMLYVLCKKETS 638
           FLGREGRI + L LF+EME    CKPDN VCNN+LYVLCKK++S
Sbjct: 179 FLGREGRINEVLSLFDEMESVFGCKPDNLVCNNVLYVLCKKQSS 222


>ref|XP_002531063.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223529358|gb|EEF31324.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 533

 Score = 62.8 bits (151), Expect = 5e-08
 Identities = 45/148 (30%), Positives = 74/148 (50%)
 Frame = +3

Query: 183 DVGLICSLLSNDKSRNLDNLLKGFKKKLDSNLVLQILTNYRHLGRRTTLEFFSWAGFEMG 362
           D   IC LLS + + +++ LL G   K+   LVL++L    + G    L FF WA  + G
Sbjct: 84  DTRNICRLLSKNPNSSIEKLLLGASFKVSPALVLEVLKRLSNAG-ALALSFFKWAEKQKG 142

Query: 363 FCLEDSVIEYMADFLGRRKLFDDLKCLLKTVYLSKGCVSCRTVSVCIRFLGREGRIKDAL 542
           F         + D LG+ K F+ +  L+  +   KG ++  T ++  R   R G++K+A+
Sbjct: 143 FMYNTESYNALIDSLGKIKQFNMIWNLVNDM-KRKGVLTKETFALISRRYARSGKVKEAM 201

Query: 543 CLFEEMEVELNCKPDNFVCNNMLYVLCK 626
             FE+ME +   K ++   N +L  L K
Sbjct: 202 NTFEKME-KFGLKIESTDFNRLLDTLIK 228


>ref|XP_002280443.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial [Vitis vinifera]
          Length = 531

 Score = 59.3 bits (142), Expect = 6e-07
 Identities = 43/150 (28%), Positives = 73/150 (48%)
 Frame = +3

Query: 177 SSDVGLICSLLSNDKSRNLDNLLKGFKKKLDSNLVLQILTNYRHLGRRTTLEFFSWAGFE 356
           + D G +C LL    + ++++LL G    +   LVL++L    + G    L FF WA  +
Sbjct: 80  AQDTGKLCKLLCTHSNSSIESLLNGASVDVSPTLVLEVLKKLSNSG-VIALSFFRWAEKQ 138

Query: 357 MGFCLEDSVIEYMADFLGRRKLFDDLKCLLKTVYLSKGCVSCRTVSVCIRFLGREGRIKD 536
            GF         + + LG+ K F  +  L+  +  SKG ++  T ++  R   R  ++K+
Sbjct: 139 KGFKYSTENYNALIEALGKIKQFKMIWNLVNDM-RSKGLLTQETFALISRRYARARKVKE 197

Query: 537 ALCLFEEMEVELNCKPDNFVCNNMLYVLCK 626
           A+  FE+ME +   +P     N +L  LCK
Sbjct: 198 AVETFEKME-KFGLQPVLSDFNRLLDALCK 226