BLASTX nr result

ID: Coptis23_contig00022115 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00022115
         (219 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI19266.3| unnamed protein product [Vitis vinifera]               75   5e-12
ref|XP_002283836.1| PREDICTED: uncharacterized protein LOC100259...    75   5e-12
ref|XP_002332475.1| predicted protein [Populus trichocarpa] gi|2...    74   1e-11
ref|XP_002302344.1| predicted protein [Populus trichocarpa] gi|2...    72   4e-11
gb|AAK84478.1| unknown [Solanum lycopersicum]                          72   5e-11

>emb|CBI19266.3| unnamed protein product [Vitis vinifera]
          Length = 514

 Score = 75.1 bits (183), Expect = 5e-12
 Identities = 43/72 (59%), Positives = 46/72 (63%)
 Frame = -2

Query: 218 NDSNDARDMGFQFAGKXXXXXXXXXXXSLFMELLGFSTQKLIXXXXXXXXXXXXXGREIF 39
           NDS+DAR MGFQFAGK           SLFMELLGFSTQK +             GREIF
Sbjct: 224 NDSSDARTMGFQFAGKAVYTAIWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIF 283

Query: 38  TNFLSSMMIHAT 3
           TNFLSS+MIHAT
Sbjct: 284 TNFLSSVMIHAT 295


>ref|XP_002283836.1| PREDICTED: uncharacterized protein LOC100259028 [Vitis vinifera]
          Length = 709

 Score = 75.1 bits (183), Expect = 5e-12
 Identities = 43/72 (59%), Positives = 46/72 (63%)
 Frame = -2

Query: 218 NDSNDARDMGFQFAGKXXXXXXXXXXXSLFMELLGFSTQKLIXXXXXXXXXXXXXGREIF 39
           NDS+DAR MGFQFAGK           SLFMELLGFSTQK +             GREIF
Sbjct: 224 NDSSDARTMGFQFAGKAVYTAIWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIF 283

Query: 38  TNFLSSMMIHAT 3
           TNFLSS+MIHAT
Sbjct: 284 TNFLSSVMIHAT 295


>ref|XP_002332475.1| predicted protein [Populus trichocarpa] gi|222832558|gb|EEE71035.1|
           predicted protein [Populus trichocarpa]
          Length = 478

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 42/72 (58%), Positives = 46/72 (63%)
 Frame = -2

Query: 218 NDSNDARDMGFQFAGKXXXXXXXXXXXSLFMELLGFSTQKLIXXXXXXXXXXXXXGREIF 39
           NDS+DAR+MGF FAGK           SLFMELLGFSTQK +             GREIF
Sbjct: 70  NDSSDARNMGFSFAGKAVYSAVWIAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIF 129

Query: 38  TNFLSSMMIHAT 3
           TNFLSS+MIHAT
Sbjct: 130 TNFLSSVMIHAT 141


>ref|XP_002302344.1| predicted protein [Populus trichocarpa] gi|222844070|gb|EEE81617.1|
           predicted protein [Populus trichocarpa]
          Length = 628

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 41/72 (56%), Positives = 46/72 (63%)
 Frame = -2

Query: 218 NDSNDARDMGFQFAGKXXXXXXXXXXXSLFMELLGFSTQKLIXXXXXXXXXXXXXGREIF 39
           N+S+DAR+MGF FAGK           SLFMELLGFSTQK +             GREIF
Sbjct: 178 NESSDARNMGFSFAGKAVYTAVWIAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIF 237

Query: 38  TNFLSSMMIHAT 3
           TNFLSS+MIHAT
Sbjct: 238 TNFLSSIMIHAT 249


>gb|AAK84478.1| unknown [Solanum lycopersicum]
          Length = 621

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 40/72 (55%), Positives = 46/72 (63%)
 Frame = -2

Query: 218 NDSNDARDMGFQFAGKXXXXXXXXXXXSLFMELLGFSTQKLIXXXXXXXXXXXXXGREIF 39
           +D+ND R+MGFQFAG+           SLFMELLGFSTQK +             GREIF
Sbjct: 206 SDANDTRNMGFQFAGRAIYTAVWVAAASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIF 265

Query: 38  TNFLSSMMIHAT 3
           TNFLSS+MIHAT
Sbjct: 266 TNFLSSIMIHAT 277


Top