BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00022095
         (578 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263889.1| PREDICTED: ATP-dependent RNA helicase DHX29 ...   206   2e-51
ref|XP_002328701.1| predicted protein [Populus trichocarpa] gi|2...   196   2e-48
ref|XP_002528999.1| ATP-dependent RNA helicase, putative [Ricinu...   191   6e-47
gb|AAG50701.1|AC079604_8 hypothetical protein [Arabidopsis thali...   176   3e-42
ref|NP_176103.2| helicase associated domain-containing protein [...   176   3e-42

>ref|XP_002263889.1| PREDICTED: ATP-dependent RNA helicase DHX29 [Vitis vinifera]
           gi|297739540|emb|CBI29722.3| unnamed protein product
           [Vitis vinifera]
          Length = 1458

 Score =  206 bits (525), Expect = 2e-51
 Identities = 109/178 (61%), Positives = 134/178 (75%), Gaps = 4/178 (2%)
 Frame = +2

Query: 56  TSAGPKLQISTENEQRLRRLLLDNTSSRDQPVTTTI---DTVSKSQKAKRLRTVYEKLSV 226
           TSAGPKLQIS ENE RLRRLLL+  S R  P ++     DT+SK+QKAK+LR+VYEKLS 
Sbjct: 23  TSAGPKLQISAENENRLRRLLLN--SGRSGPASSPAPADDTLSKAQKAKKLRSVYEKLSC 80

Query: 227 EGFTSDQIEASLSALNEDGTFEAALDWLCLNIPGNELPLKFSRGASLN-DQGACISIIST 403
           EGF++D IE +LSAL E  TFE+ALDWLC N+  NELPLKFS G SL+ ++G  I IIST
Sbjct: 81  EGFSNDHIELALSALKEGATFESALDWLCFNLSSNELPLKFSSGTSLHANEGGSIGIIST 140

Query: 404 AREDWVPQTHDPVTQDEGEVSEVSYKIKARVDEDTLDVRQPSQADWIRQYMEQQEEEE 577
           AREDW P  +     ++ EVS +S +IK R D+D++D RQ SQADWIRQY+ QQEE+E
Sbjct: 141 AREDWTPSVYSSGNIEDDEVSGISIRIKGRRDDDSVDSRQQSQADWIRQYVAQQEEDE 198


>ref|XP_002328701.1| predicted protein [Populus trichocarpa] gi|222838999|gb|EEE77350.1|
           predicted protein [Populus trichocarpa]
          Length = 870

 Score =  196 bits (498), Expect = 2e-48
 Identities = 109/185 (58%), Positives = 138/185 (74%), Gaps = 11/185 (5%)
 Frame = +2

Query: 56  TSAGPKLQISTENEQRLRRLLLDNTSSRDQPVTTTIDT--VSKSQKAKRLRTVYEKLSVE 229
           +++GP+LQIS ENE RLRRLLL++T++     T T +T  +SK+QKAK+L+ +YEKLS E
Sbjct: 24  SNSGPRLQISAENENRLRRLLLNSTTTPPLQTTVTDNTNSLSKAQKAKKLKNIYEKLSCE 83

Query: 230 GFTSDQIEASLSALNEDGTFEAALDWLCLNIPGNELPLKFSRGASLN-DQGA-CISIIST 403
           GF++D IE +LS+L ++ TFE ALDWLCLN+ GNELPLKFS G SLN D+G   +S++ST
Sbjct: 84  GFSNDHIELALSSLKDNATFETALDWLCLNLAGNELPLKFSGGTSLNSDRGEWAVSVVST 143

Query: 404 AREDWVPQTHDPVTQDEGEVSE--VSYKIKARVDED-----TLDVRQPSQADWIRQYMEQ 562
           AREDWVP   D   + EGE  E  V  + KAR DE+      LD RQPSQADWIRQY+EQ
Sbjct: 144 AREDWVPYV-DSSRRVEGEEEEQRVLVRTKARWDEEDGDGNVLDFRQPSQADWIRQYVEQ 202

Query: 563 QEEEE 577
           QEEEE
Sbjct: 203 QEEEE 207


>ref|XP_002528999.1| ATP-dependent RNA helicase, putative [Ricinus communis]
           gi|223531539|gb|EEF33369.1| ATP-dependent RNA helicase,
           putative [Ricinus communis]
          Length = 1509

 Score =  191 bits (486), Expect = 6e-47
 Identities = 100/178 (56%), Positives = 130/178 (73%), Gaps = 4/178 (2%)
 Frame = +2

Query: 56  TSAGPKLQISTENEQRLRRLLLDNTSSRDQPVTTTIDTVSKSQKAKRLRTVYEKLSVEGF 235
           +S+GP+LQIS ENE RLRRLLL N++   QP     + +SK+QKAKRL+ VYEKLS EGF
Sbjct: 21  SSSGPRLQISAENENRLRRLLL-NSNRSTQPTPPVQENLSKAQKAKRLKNVYEKLSCEGF 79

Query: 236 TSDQIEASLSALNEDGTFEAALDWLCLNIPGNELPLKFSRGASLNDQGACISIISTARED 415
           ++DQIE +L++L ++ TFE+ALDWLC N+PGNELP+KFS G SL      +S++STARED
Sbjct: 80  SNDQIELALTSLKDNATFESALDWLCFNLPGNELPVKFSSGTSLYASEGSVSVVSTARED 139

Query: 416 WVPQTHDPVTQDEGEVSEVSYKIKARVDED---TLDVRQP-SQADWIRQYMEQQEEEE 577
             P  +   T+++ +V     +IK R D+D      +RQP SQADWIRQYMEQQEEEE
Sbjct: 140 RTPTVNAANTEEDVQVQAAFVRIKGRRDDDDDNDTSLRQPSSQADWIRQYMEQQEEEE 197


>gb|AAG50701.1|AC079604_8 hypothetical protein [Arabidopsis thaliana]
          Length = 1453

 Score =  176 bits (446), Expect = 3e-42
 Identities = 96/175 (54%), Positives = 121/175 (69%), Gaps = 2/175 (1%)
 Frame = +2

Query: 59  SAGPKLQISTENEQRLRRLLLDNTSSRDQPVTTTIDTVSKSQKAKRLRTVYEKLSVEGFT 238
           S+GPKLQIS ENE RLRRLLL++  S         +++SK+QK K+L  VYEKLS EGF 
Sbjct: 29  SSGPKLQISAENEDRLRRLLLNSGRSGPSIPAPISNSLSKAQKTKKLNNVYEKLSCEGFV 88

Query: 239 SDQIEASLSALNEDGTFEAALDWLCLNIPGNELPLKFSRGAS-LNDQGACISIISTARED 415
            DQIE +LS+L +  TFEAALDWLCLN+P +ELP+KFS GAS     G  + +IST+R+D
Sbjct: 89  DDQIELALSSLRDGATFEAALDWLCLNLPSHELPVKFSTGASRFPSTGGSVGVISTSRDD 148

Query: 416 WVPQTHDPVTQDEGEVSEVSYKIKARVD-EDTLDVRQPSQADWIRQYMEQQEEEE 577
           W   T   V  +E E + V  ++K + D EDTL   + SQADWIRQYM +QEEEE
Sbjct: 149 WNDSTDSSVRVEEEEPA-VFVRVKGKQDEEDTLSSDKSSQADWIRQYMMRQEEEE 202


>ref|NP_176103.2| helicase associated domain-containing protein [Arabidopsis
           thaliana] gi|332195372|gb|AEE33493.1| helicase
           associated domain-containing protein [Arabidopsis
           thaliana]
          Length = 1459

 Score =  176 bits (446), Expect = 3e-42
 Identities = 96/175 (54%), Positives = 121/175 (69%), Gaps = 2/175 (1%)
 Frame = +2

Query: 59  SAGPKLQISTENEQRLRRLLLDNTSSRDQPVTTTIDTVSKSQKAKRLRTVYEKLSVEGFT 238
           S+GPKLQIS ENE RLRRLLL++  S         +++SK+QK K+L  VYEKLS EGF 
Sbjct: 29  SSGPKLQISAENEDRLRRLLLNSGRSGPSIPAPISNSLSKAQKTKKLNNVYEKLSCEGFV 88

Query: 239 SDQIEASLSALNEDGTFEAALDWLCLNIPGNELPLKFSRGAS-LNDQGACISIISTARED 415
            DQIE +LS+L +  TFEAALDWLCLN+P +ELP+KFS GAS     G  + +IST+R+D
Sbjct: 89  DDQIELALSSLRDGATFEAALDWLCLNLPSHELPVKFSTGASRFPSTGGSVGVISTSRDD 148

Query: 416 WVPQTHDPVTQDEGEVSEVSYKIKARVD-EDTLDVRQPSQADWIRQYMEQQEEEE 577
           W   T   V  +E E + V  ++K + D EDTL   + SQADWIRQYM +QEEEE
Sbjct: 149 WNDSTDSSVRVEEEEPA-VFVRVKGKQDEEDTLSSDKSSQADWIRQYMMRQEEEE 202