BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00022089
         (879 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275560.2| PREDICTED: 5'-3' exoribonuclease 4-like [Vit...   334   2e-89
emb|CBI26575.3| unnamed protein product [Vitis vinifera]              334   2e-89
emb|CAN59715.1| hypothetical protein VITISV_006076 [Vitis vinifera]   321   2e-85
ref|XP_002319214.1| predicted protein [Populus trichocarpa] gi|2...   286   4e-75
ref|XP_002519992.1| 5'->3' exoribonuclease, putative [Ricinus co...   257   3e-66

>ref|XP_002275560.2| PREDICTED: 5'-3' exoribonuclease 4-like [Vitis vinifera]
          Length = 834

 Score =  334 bits (856), Expect = 2e-89
 Identities = 168/296 (56%), Positives = 211/296 (71%), Gaps = 4/296 (1%)
 Frame = +3

Query: 3    DVRKAQQSVKGPQIKKSSLHIGRRERCKETKLREVSGEEANDYISRQQFQFLNVWVLRDY 182
            DV KA +  K  + +K SL + +R + K+    EV GE+  D+ISRQ+FQFLN+W LRDY
Sbjct: 254  DVHKAYRKDKNNKPRKDSLLVNKRGKSKQG---EVGGEDIEDFISRQKFQFLNIWTLRDY 310

Query: 183  LTHDMQVPNSTVRLDVERLIDDFVFICLFVGNDFLPHVPSLEISEGAIDLLMNVYKKEFV 362
            L HDM +P+ +++ D+ERLIDDFVF+CLFVGNDFLPH+PSLEISEGAIDLLM VYKKEFV
Sbjct: 311  LAHDMSIPDRSLKTDLERLIDDFVFMCLFVGNDFLPHMPSLEISEGAIDLLMTVYKKEFV 370

Query: 363  LMGGYLTDSYKVNLKRVEHFVQAVAYHENAIFRKRRQVD----MRFQGGSNAQRRTSDKS 530
             +GGYLT+S +V L+RVE F+Q V  HENAIFRKR QV     +RFQG SN ++  SD S
Sbjct: 371  QIGGYLTNSSEVYLERVERFMQVVGSHENAIFRKRSQVQKKRGVRFQGSSN-KKTVSDYS 429

Query: 531  RKLSHAKQNNSENFWSSINXXXXXXXXXXXXXXXDKSQGSGHNATPNGASTTTDNIRLGE 710
                   Q  + +  SS+                 + Q S  N    GA++  D I+LGE
Sbjct: 430  TTPCVEPQGMTGSSGSSLEPRKTPFCQDSKNSTVKEIQCS-TNCISTGANSLVDKIKLGE 488

Query: 711  EGWKERFYTEKFEVKTEDERDKIRKHAVLKYIEGMCWVMHYYYEGVCSWKWFYPYH 878
            +GWKERFY EKFE KTED+R+++R+HAVLKYIEG+CWVMHYYY+GVCSW+WFYPYH
Sbjct: 489  DGWKERFYVEKFEAKTEDDRERVRRHAVLKYIEGICWVMHYYYQGVCSWQWFYPYH 544


>emb|CBI26575.3| unnamed protein product [Vitis vinifera]
          Length = 845

 Score =  334 bits (856), Expect = 2e-89
 Identities = 168/296 (56%), Positives = 211/296 (71%), Gaps = 4/296 (1%)
 Frame = +3

Query: 3    DVRKAQQSVKGPQIKKSSLHIGRRERCKETKLREVSGEEANDYISRQQFQFLNVWVLRDY 182
            DV KA +  K  + +K SL + +R + K+    EV GE+  D+ISRQ+FQFLN+W LRDY
Sbjct: 235  DVHKAYRKDKNNKPRKDSLLVNKRGKSKQG---EVGGEDIEDFISRQKFQFLNIWTLRDY 291

Query: 183  LTHDMQVPNSTVRLDVERLIDDFVFICLFVGNDFLPHVPSLEISEGAIDLLMNVYKKEFV 362
            L HDM +P+ +++ D+ERLIDDFVF+CLFVGNDFLPH+PSLEISEGAIDLLM VYKKEFV
Sbjct: 292  LAHDMSIPDRSLKTDLERLIDDFVFMCLFVGNDFLPHMPSLEISEGAIDLLMTVYKKEFV 351

Query: 363  LMGGYLTDSYKVNLKRVEHFVQAVAYHENAIFRKRRQVD----MRFQGGSNAQRRTSDKS 530
             +GGYLT+S +V L+RVE F+Q V  HENAIFRKR QV     +RFQG SN ++  SD S
Sbjct: 352  QIGGYLTNSSEVYLERVERFMQVVGSHENAIFRKRSQVQKKRGVRFQGSSN-KKTVSDYS 410

Query: 531  RKLSHAKQNNSENFWSSINXXXXXXXXXXXXXXXDKSQGSGHNATPNGASTTTDNIRLGE 710
                   Q  + +  SS+                 + Q S  N    GA++  D I+LGE
Sbjct: 411  TTPCVEPQGMTGSSGSSLEPRKTPFCQDSKNSTVKEIQCS-TNCISTGANSLVDKIKLGE 469

Query: 711  EGWKERFYTEKFEVKTEDERDKIRKHAVLKYIEGMCWVMHYYYEGVCSWKWFYPYH 878
            +GWKERFY EKFE KTED+R+++R+HAVLKYIEG+CWVMHYYY+GVCSW+WFYPYH
Sbjct: 470  DGWKERFYVEKFEAKTEDDRERVRRHAVLKYIEGICWVMHYYYQGVCSWQWFYPYH 525


>emb|CAN59715.1| hypothetical protein VITISV_006076 [Vitis vinifera]
          Length = 1102

 Score =  321 bits (822), Expect = 2e-85
 Identities = 165/296 (55%), Positives = 205/296 (69%), Gaps = 4/296 (1%)
 Frame = +3

Query: 3    DVRKAQQSVKGPQIKKSSLHIGRRERCKETKLREVSGEEANDYISRQQFQFLNVWVLRDY 182
            DV KA +  K  + +K SL + +R   K+    EV GE+  D+ISRQ+FQFLN+W LRDY
Sbjct: 385  DVHKAYRKDKNNKPRKDSLLVNKRGXSKQG---EVGGEDIEDFISRQKFQFLNIWTLRDY 441

Query: 183  LTHDMQVPNSTVRLDVERLIDDFVFICLFVGNDFLPHVPSLEISEGAIDLLMNVYKKEFV 362
            L HDM +P+ +++ D+ERLIDDFVF+CLFVGNDFLPH+PSLEISEGAIDLLM VYKKEFV
Sbjct: 442  LAHDMSIPDRSLKTDLERLIDDFVFMCLFVGNDFLPHMPSLEISEGAIDLLMTVYKKEFV 501

Query: 363  LMGGYLTDSYKVNLKRVEHFVQAVAYHENAIFRKRRQVD----MRFQGGSNAQRRTSDKS 530
             +GGYLT+S +V L+RVE F+Q V  HENAIFRKR QV     +RFQG SN ++  SD S
Sbjct: 502  QIGGYLTNSSEVYLERVERFMQVVGSHENAIFRKRSQVQKKRGVRFQGSSN-KKTVSDYS 560

Query: 531  RKLSHAKQNNSENFWSSINXXXXXXXXXXXXXXXDKSQGSGHNATPNGASTTTDNIRLGE 710
                   Q  + +  SS+                          TP      + NI+LGE
Sbjct: 561  TTPCVEPQGMTGSSGSSLEP----------------------RKTP--FCQDSKNIKLGE 596

Query: 711  EGWKERFYTEKFEVKTEDERDKIRKHAVLKYIEGMCWVMHYYYEGVCSWKWFYPYH 878
            +GWKERFY EKFE KTED+R+++R+HAVLKYIEG+CWVMHYYY+GVCSW+WFYPYH
Sbjct: 597  DGWKERFYVEKFEAKTEDDRERVRRHAVLKYIEGICWVMHYYYQGVCSWQWFYPYH 652


>ref|XP_002319214.1| predicted protein [Populus trichocarpa] gi|222857590|gb|EEE95137.1|
           predicted protein [Populus trichocarpa]
          Length = 692

 Score =  286 bits (732), Expect = 4e-75
 Identities = 139/255 (54%), Positives = 179/255 (70%)
 Frame = +3

Query: 114 EEANDYISRQQFQFLNVWVLRDYLTHDMQVPNSTVRLDVERLIDDFVFICLFVGNDFLPH 293
           E   ++IS  +FQFLNVW+LR+YL +D+++P++T+++D+ER+IDDFVF+CLFVGNDFLPH
Sbjct: 267 ENIENHISGMKFQFLNVWILREYLAYDLRIPDTTLKVDLERVIDDFVFMCLFVGNDFLPH 326

Query: 294 VPSLEISEGAIDLLMNVYKKEFVLMGGYLTDSYKVNLKRVEHFVQAVAYHENAIFRKRRQ 473
           +PSLEISEGAIDLLM VYKKEF  MGGYLT+S+++NL RVEHFVQA+  HE+AIFR+R Q
Sbjct: 327 IPSLEISEGAIDLLMTVYKKEFAQMGGYLTNSFEINLIRVEHFVQALGSHESAIFRRRNQ 386

Query: 474 VDMRFQGGSNAQRRTSDKSRKLSHAKQNNSENFWSSINXXXXXXXXXXXXXXXDKSQGSG 653
           V +                        N+ E  +  I+                K Q + 
Sbjct: 387 VSL------------------------NDLEIRFQRIS----------------KRQQAF 406

Query: 654 HNATPNGASTTTDNIRLGEEGWKERFYTEKFEVKTEDERDKIRKHAVLKYIEGMCWVMHY 833
           H++     S   D I+LG+EGWKER+Y EKFE K+EDERD IR+HAV KY+EG+CWVM Y
Sbjct: 407 HSS----KSLFDDGIKLGDEGWKERYYAEKFEAKSEDERDTIRRHAVFKYVEGICWVMRY 462

Query: 834 YYEGVCSWKWFYPYH 878
           YYEGVCSW+WFYPYH
Sbjct: 463 YYEGVCSWQWFYPYH 477


>ref|XP_002519992.1| 5'->3' exoribonuclease, putative [Ricinus communis]
            gi|223540756|gb|EEF42316.1| 5'->3' exoribonuclease,
            putative [Ricinus communis]
          Length = 1545

 Score =  257 bits (656), Expect = 3e-66
 Identities = 126/278 (45%), Positives = 180/278 (64%)
 Frame = +3

Query: 45   KKSSLHIGRRERCKETKLREVSGEEANDYISRQQFQFLNVWVLRDYLTHDMQVPNSTVRL 224
            KK       +++    K + +  +   +Y+SR  F+FL +W LR++L +DM++PN  ++ 
Sbjct: 262  KKHKFVWNPQKKANSKKKKWMPVKTLEEYVSRLNFKFLYIWALREHLEYDMRIPNLALQT 321

Query: 225  DVERLIDDFVFICLFVGNDFLPHVPSLEISEGAIDLLMNVYKKEFVLMGGYLTDSYKVNL 404
            D+ERLIDDF+F+CLFVGNDFLPH+P+LEIS+GAIDLLM VY+KEF  MGGYLT+S++++L
Sbjct: 322  DLERLIDDFIFMCLFVGNDFLPHIPTLEISQGAIDLLMKVYRKEFRRMGGYLTNSFELDL 381

Query: 405  KRVEHFVQAVAYHENAIFRKRRQVDMRFQGGSNAQRRTSDKSRKLSHAKQNNSENFWSSI 584
             RVEHF+QAV  H++AIFR+  Q         +A++      RKL    QN+      SI
Sbjct: 382  TRVEHFIQAVGLHDDAIFRQHIQKLKE----KSARKEERSSKRKLEKLLQNDPHA--ESI 435

Query: 585  NXXXXXXXXXXXXXXXDKSQGSGHNATPNGASTTTDNIRLGEEGWKERFYTEKFEVKTED 764
            +               +K+ G   +   +  S   D     E+ WKER+Y +KF+ KT+D
Sbjct: 436  S--------GGSSLLMEKAGGMNFDEPIHHLSAGIDTGDKEEDDWKERYYAKKFKAKTKD 487

Query: 765  ERDKIRKHAVLKYIEGMCWVMHYYYEGVCSWKWFYPYH 878
            E++ IR+  V+KY+EG+CWVM YYYEGVCSW+WFYPYH
Sbjct: 488  EQESIRRDVVIKYMEGLCWVMRYYYEGVCSWQWFYPYH 525