BLASTX nr result
ID: Coptis23_contig00022055
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00022055
(750 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002330082.1| predicted protein [Populus trichocarpa] gi|2... 324 1e-86
ref|XP_002512521.1| pentatricopeptide repeat-containing protein,... 322 7e-86
emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera] 318 6e-85
ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containi... 314 1e-83
ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containi... 314 1e-83
>ref|XP_002330082.1| predicted protein [Populus trichocarpa] gi|222871507|gb|EEF08638.1|
predicted protein [Populus trichocarpa]
Length = 665
Score = 324 bits (831), Expect = 1e-86
Identities = 152/248 (61%), Positives = 196/248 (79%)
Frame = +3
Query: 6 HVFLWNSMIKGCIENNDVNQAILFFREMIVANSIPNKFTFPSLFKACTDSGALVEGLQIH 185
+VF++N +IKGC++NN+ +AI + +M++A++ PNKFT+P+LFKACT + A EG+Q+H
Sbjct: 94 NVFVFNIIIKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEAAEEGVQVH 153
Query: 186 NHVIKHGLQGDGHIRSAGIQMYATCGYTREARQILDLSEESDAVCWNAMIDGYFKCGDVD 365
HVIK GL GD HIRSAGIQMY + G AR++L SD +C+NAMIDGY KCG+V+
Sbjct: 154 AHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVE 213
Query: 366 AARGLFESMEHKTVGSWNTMISGYAKCGRIEDAKELFLEMPVRDDVSWSAMIDGYMKGGY 545
AA+ LF SME K VGSWN M+SG AKCG IE+A+ELF EM ++++SWSAMIDGY+KGGY
Sbjct: 214 AAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGY 273
Query: 546 CKEALAIFQEMQNQGVRPKKFVLSSALAACANVSSFDQGRWIHAYLRRNSIRVDAILGTS 725
KEAL +F MQ + +RP+KFVLSS LAACAN+ + DQGRWIHAY+ NS DA+LGT+
Sbjct: 274 YKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTA 333
Query: 726 LVDMYAKC 749
LVDMYAKC
Sbjct: 334 LVDMYAKC 341
Score = 71.2 bits (173), Expect = 2e-10
Identities = 57/224 (25%), Positives = 94/224 (41%), Gaps = 9/224 (4%)
Frame = +3
Query: 18 WNSMIKGCIENNDVNQAILFFREMIVANSIPNKFTFPSLFKACTDSGALVEGLQIHNHVI 197
W++MI G I+ +A+ F M P KF S+ AC + GAL +G IH +V
Sbjct: 261 WSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVN 320
Query: 198 KHGLQGDGHIRSAGIQMYATCGYTREARQILDLSEESDAVCWNAMIDGYFKCGDVDAARG 377
+ D + +A + MYA CG A + + E+ + WNAMI G G + A
Sbjct: 321 NNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIE 380
Query: 378 LFESMEHKTVG----SWNTMISGYAKCGRIEDAKELFLEMPVRDDVS-----WSAMIDGY 530
LF M+ + + ++S A G +++ +F M + + ++D
Sbjct: 381 LFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDLL 440
Query: 531 MKGGYCKEALAIFQEMQNQGVRPKKFVLSSALAACANVSSFDQG 662
+ G EA + M + + P V + L AC + G
Sbjct: 441 GRAGLLGEAEEV---MYSMPMEPSAAVWGALLGACRKHGDVELG 481
Score = 60.1 bits (144), Expect = 5e-07
Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 8/182 (4%)
Frame = +3
Query: 3 RHVFLWNSMIKGCIENNDVNQAILFFREMIVANSIPNKFTFPSLFKACTDSGALVEGLQI 182
+ VF WN+MI G + AI F +M PN T + AC SG + EGL+I
Sbjct: 357 KEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRI 416
Query: 183 HNHVIK-HGLQGDGHIRSAGIQMYATCGYTREARQIL-DLSEESDAVCWNAMIDGYFKCG 356
N + + +G++ + + G EA +++ + E A W A++ K G
Sbjct: 417 FNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGALLGACRKHG 476
Query: 357 DVDAAR---GLFESMEHKTVGSWNTMISGYAKCGRIED---AKELFLEMPVRDDVSWSAM 518
DV+ + +E + G + + + YA+ GR +D ++L E V+ S M
Sbjct: 477 DVELGERVGKILLELEPQNSGRYALLSNIYARAGRWDDVANVRKLMKERGVKTSTGIS-M 535
Query: 519 ID 524
ID
Sbjct: 536 ID 537
>ref|XP_002512521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223548482|gb|EEF49973.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 422
Score = 322 bits (824), Expect = 7e-86
Identities = 149/248 (60%), Positives = 199/248 (80%)
Frame = +3
Query: 6 HVFLWNSMIKGCIENNDVNQAILFFREMIVANSIPNKFTFPSLFKACTDSGALVEGLQIH 185
+VF++N +IK C++N++ +AI F+ +M+ AN+ PNKFT+PSL KAC + A EG+Q+H
Sbjct: 93 NVFVYNIIIKACLDNDEPFKAICFYYKMVAANARPNKFTYPSLLKACGVATAAKEGVQLH 152
Query: 186 NHVIKHGLQGDGHIRSAGIQMYATCGYTREARQILDLSEESDAVCWNAMIDGYFKCGDVD 365
HVIK GL GD HIRSAGIQMYAT G+ AR++LD ESD +C+NAMIDGY+K GDVD
Sbjct: 153 GHVIKQGLTGDVHIRSAGIQMYATLGHMAAARRMLDEDGESDVICFNAMIDGYYKFGDVD 212
Query: 366 AARGLFESMEHKTVGSWNTMISGYAKCGRIEDAKELFLEMPVRDDVSWSAMIDGYMKGGY 545
+A+ LFE ME ++VGSWN M+SG AK G +++A+ELF +M +D++SWS+MIDGY+KGG
Sbjct: 213 SAKELFEKMEDRSVGSWNVMVSGLAKNGMVKEARELFNDMREKDEISWSSMIDGYIKGGN 272
Query: 546 CKEALAIFQEMQNQGVRPKKFVLSSALAACANVSSFDQGRWIHAYLRRNSIRVDAILGTS 725
KEAL +F MQ + +RPKKFVLSS LAACAN+ + DQGRWIHAY+++N + +DA+LGT+
Sbjct: 273 YKEALEVFNVMQEEKIRPKKFVLSSVLAACANLGALDQGRWIHAYVKKNPMYLDAVLGTA 332
Query: 726 LVDMYAKC 749
LVDMYAKC
Sbjct: 333 LVDMYAKC 340
Score = 88.2 bits (217), Expect = 2e-15
Identities = 61/192 (31%), Positives = 89/192 (46%), Gaps = 4/192 (2%)
Frame = +3
Query: 18 WNSMIKGCIENNDVNQAILFFREMIVANSIPNKFTFPSLFKACTDSGALVEGLQIHNHVI 197
W+SMI G I+ + +A+ F M P KF S+ AC + GAL +G IH +V
Sbjct: 260 WSSMIDGYIKGGNYKEALEVFNVMQEEKIRPKKFVLSSVLAACANLGALDQGRWIHAYVK 319
Query: 198 KHGLQGDGHIRSAGIQMYATCGYTREARQILDLSEESDAVCWNAMIDGYFKCGDVDAARG 377
K+ MY DAV A++D Y KCG +D A
Sbjct: 320 KN-------------PMYL------------------DAVLGTALVDMYAKCGRLDMAWD 348
Query: 378 LFESMEHKTVGSWNTMISGYAKCGRIEDAKELFLEMPVR----DDVSWSAMIDGYMKGGY 545
+FE+M+ K V +WN MI G A GR EDA +LFL+M +++++ +++ G
Sbjct: 349 VFETMKEKEVFTWNAMICGLAMHGRAEDAIKLFLKMQKEKVRSNEITFVGLLNACAHKGM 408
Query: 546 CKEALAIFQEMQ 581
E L I M+
Sbjct: 409 VDEGLNILDSME 420
>emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
Length = 673
Score = 318 bits (816), Expect = 6e-85
Identities = 150/250 (60%), Positives = 197/250 (78%), Gaps = 2/250 (0%)
Frame = +3
Query: 6 HVFLWNSMIKGCIENNDVNQAILFFREMIVANSIPNKFTFPSLFKACTDSGALVEGLQIH 185
+VFLWN MIK CIENN+ +AIL + EM+VA+S PNK+T+P++ KAC+DSG + EG+Q+H
Sbjct: 102 NVFLWNCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVH 161
Query: 186 NHVIKHGLQGDGHIRSAGIQMYATCGYTREARQILD-LSEESDAVCWNAMIDGYFKCGDV 362
H++KHGL GDGHI S+ I+MYA+ G EAR+ILD E DAVCWNAMIDGY + G+V
Sbjct: 162 AHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEV 221
Query: 363 DAARGLFESMEHKT-VGSWNTMISGYAKCGRIEDAKELFLEMPVRDDVSWSAMIDGYMKG 539
+AAR LFE M ++ + +WN MISG+++CG +E A+E F EM RD++SWSAMIDGY++
Sbjct: 222 EAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQE 281
Query: 540 GYCKEALAIFQEMQNQGVRPKKFVLSSALAACANVSSFDQGRWIHAYLRRNSIRVDAILG 719
G EAL IF +MQ + +RP+KFVL S L+ACAN+ + DQGRWIH Y +RNSI++D +LG
Sbjct: 282 GCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLG 341
Query: 720 TSLVDMYAKC 749
TSLVDMYAKC
Sbjct: 342 TSLVDMYAKC 351
Score = 84.3 bits (207), Expect = 2e-14
Identities = 54/197 (27%), Positives = 91/197 (46%), Gaps = 2/197 (1%)
Frame = +3
Query: 18 WNSMIKGCIENNDVNQAILFFREMIVANSIPNKFTFPSLFKACTDSGALVEGLQIHNHVI 197
W++MI G I+ +A+ F +M P KF PS+ AC + GAL +G IH +
Sbjct: 271 WSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAK 330
Query: 198 KHGLQGDGHIRSAGIQMYATCGYTREARQILDLSEESDAVCWNAMIDGYFKCGDVDAARG 377
++ +Q DG + ++ + MYA CG A ++ + + WNAMI
Sbjct: 331 RNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMI-------------- 376
Query: 378 LFESMEHKTVGSWNTMISGYAKCGRIEDAKELFLEMPV-RDDVSWSAMIDGYMKGGYCKE 554
G A GR EDA +LF +M + +++++ +++ GG ++
Sbjct: 377 -----------------GGLAMHGRAEDAIDLFSKMDIYPNEITFVGVLNACAHGGLVQK 419
Query: 555 ALAIFQEMQNQ-GVRPK 602
L IF M+ + GV P+
Sbjct: 420 GLTIFNSMRKEYGVEPQ 436
>ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 314 bits (805), Expect = 1e-83
Identities = 145/248 (58%), Positives = 195/248 (78%)
Frame = +3
Query: 6 HVFLWNSMIKGCIENNDVNQAILFFREMIVANSIPNKFTFPSLFKACTDSGALVEGLQIH 185
+VF+WN +IKGC+ENN + +AI F+ M++ ++ PNKFT+P+LFKAC+ + A+ EG QIH
Sbjct: 97 NVFIWNIVIKGCLENNKLFKAIYFYGRMVI-DARPNKFTYPTLFKACSVAQAVQEGRQIH 155
Query: 186 NHVIKHGLQGDGHIRSAGIQMYATCGYTREARQILDLSEESDAVCWNAMIDGYFKCGDVD 365
HV+KHG+ D HI+SAGIQMYA+ G +AR++ S ESD VCWN MIDGY KCG ++
Sbjct: 156 GHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMF-YSGESDVVCWNTMIDGYLKCGVLE 214
Query: 366 AARGLFESMEHKTVGSWNTMISGYAKCGRIEDAKELFLEMPVRDDVSWSAMIDGYMKGGY 545
AA+GLF M K +GSWN MI+G AK G + DA++LF EM RD++SWS+M+DGY+ G
Sbjct: 215 AAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGR 274
Query: 546 CKEALAIFQEMQNQGVRPKKFVLSSALAACANVSSFDQGRWIHAYLRRNSIRVDAILGTS 725
KEAL IFQ+MQ + RP +F+LSS LAAC+N+ + DQGRW+HAYL+RNSI++DA+LGT+
Sbjct: 275 YKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTA 334
Query: 726 LVDMYAKC 749
L+DMYAKC
Sbjct: 335 LLDMYAKC 342
Score = 74.7 bits (182), Expect = 2e-11
Identities = 54/222 (24%), Positives = 98/222 (44%), Gaps = 9/222 (4%)
Frame = +3
Query: 18 WNSMIKGCIENNDVNQAILFFREMIVANSIPNKFTFPSLFKACTDSGALVEGLQIHNHVI 197
W+SM+ G I +A+ F++M + P +F S+ AC++ GA+ +G +H ++
Sbjct: 262 WSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLK 321
Query: 198 KHGLQGDGHIRSAGIQMYATCGYTREARQILDLSEESDAVCWNAMIDGYFKCGDVDAARG 377
++ ++ D + +A + MYA CG ++ + +E + WNAMI G G + A
Sbjct: 322 RNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALE 381
Query: 378 LFESMEHKTVGSWNTMISGY----AKCGRIEDAKELFLEMPVRDDVS-----WSAMIDGY 530
LF ++ + + G A G ++ +F M V + M+D
Sbjct: 382 LFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLL 441
Query: 531 MKGGYCKEALAIFQEMQNQGVRPKKFVLSSALAACANVSSFD 656
+ G EA + M ++P V + L AC +FD
Sbjct: 442 GRSGLFSEAEDLINSMP---MKPNAAVWGALLGACRIHGNFD 480
>ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
isoform 1 [Vitis vinifera]
Length = 672
Score = 314 bits (805), Expect = 1e-83
Identities = 148/250 (59%), Positives = 196/250 (78%), Gaps = 2/250 (0%)
Frame = +3
Query: 6 HVFLWNSMIKGCIENNDVNQAILFFREMIVANSIPNKFTFPSLFKACTDSGALVEGLQIH 185
+VFLWN MIK CIENN+ +AIL + EM+VA+ PNK+T+P++ KAC+D+G + EG+Q+H
Sbjct: 101 NVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVH 160
Query: 186 NHVIKHGLQGDGHIRSAGIQMYATCGYTREARQILD-LSEESDAVCWNAMIDGYFKCGDV 362
H++KHGL GDGHI S+ I+MYA+ G EAR+ILD E DAVCWNAMIDGY + G+V
Sbjct: 161 AHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEV 220
Query: 363 DAARGLFESMEHKT-VGSWNTMISGYAKCGRIEDAKELFLEMPVRDDVSWSAMIDGYMKG 539
+AAR LFE M ++ + +WN MISG+++CG +E A+E F EM RD++SWSAMIDGY++
Sbjct: 221 EAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQE 280
Query: 540 GYCKEALAIFQEMQNQGVRPKKFVLSSALAACANVSSFDQGRWIHAYLRRNSIRVDAILG 719
G EAL IF +MQ + +RP+KFVL S L+ACAN+ + DQGRWIH Y +RNSI++D +LG
Sbjct: 281 GCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLG 340
Query: 720 TSLVDMYAKC 749
TSLVDMYAKC
Sbjct: 341 TSLVDMYAKC 350
Score = 85.1 bits (209), Expect = 1e-14
Identities = 54/197 (27%), Positives = 91/197 (46%), Gaps = 2/197 (1%)
Frame = +3
Query: 18 WNSMIKGCIENNDVNQAILFFREMIVANSIPNKFTFPSLFKACTDSGALVEGLQIHNHVI 197
W++MI G I+ +A+ F +M P KF PS+ AC + GAL +G IH +
Sbjct: 270 WSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAK 329
Query: 198 KHGLQGDGHIRSAGIQMYATCGYTREARQILDLSEESDAVCWNAMIDGYFKCGDVDAARG 377
++ +Q DG + ++ + MYA CG A ++ + + WNAMI
Sbjct: 330 RNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMI-------------- 375
Query: 378 LFESMEHKTVGSWNTMISGYAKCGRIEDAKELFLEMPVR-DDVSWSAMIDGYMKGGYCKE 554
G A GR EDA +LF +M + +++++ +++ GG ++
Sbjct: 376 -----------------GGLAMHGRAEDAIDLFSKMDINPNEITFVGVLNACAHGGLVQK 418
Query: 555 ALAIFQEMQNQ-GVRPK 602
L IF M+ + GV P+
Sbjct: 419 GLTIFNSMRKEYGVEPQ 435