BLASTX nr result

ID: Coptis23_contig00021998 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00021998
         (1143 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273700.1| PREDICTED: reticulon-like protein B12 [Vitis...   249   7e-64
ref|XP_004137740.1| PREDICTED: reticulon-like protein B12-like [...   233   9e-59
ref|XP_003516933.1| PREDICTED: reticulon-like protein B12-like [...   227   4e-57
ref|XP_003520935.1| PREDICTED: reticulon-like protein B12-like [...   224   2e-56
ref|XP_002527867.1| 3-beta-hydroxy-delta5-steroid dehydrogenase,...   221   2e-55

>ref|XP_002273700.1| PREDICTED: reticulon-like protein B12 [Vitis vinifera]
           gi|297740256|emb|CBI30438.3| unnamed protein product
           [Vitis vinifera]
          Length = 209

 Score =  249 bits (637), Expect = 7e-64
 Identities = 127/202 (62%), Positives = 157/202 (77%), Gaps = 4/202 (1%)
 Frame = +2

Query: 68  RLFNR---LDQILGESLIADVMLWRRREVTVGILLVTVSTWLVFEKSGYXXXXXXXXXXX 238
           RLFNR   + QILG  L+ADVMLWR++ +TVGILLVT++ W+VFE SGY           
Sbjct: 6   RLFNRQRTVHQILGGGLVADVMLWRQKNLTVGILLVTLAAWVVFELSGYTLLSLVSSVFL 65

Query: 239 XXXXILFLWAKSAQILNRPAPPLPDLQLSEDVINEAAAFIRAHVNTLLAVSRDVTLGKDS 418
               ILFLWAKSA ILNRPAPPLP+L LSE+++NE AAFIR   NTLL VS+D+ LGKDS
Sbjct: 66  LLVSILFLWAKSAAILNRPAPPLPNLYLSEEIVNEVAAFIRTRTNTLLQVSQDIALGKDS 125

Query: 419 KLFFKVAACMWLISVVGGWTDLLTLGYTSVVVLLTVPALYQKYEDQIDKYVIMAYKELQR 598
           ++FFKVAA +WLISVVGG TD LTLGY S+V++LTVPALY++YED ID+YV+M Y++LQ 
Sbjct: 126 RMFFKVAAYLWLISVVGGLTDFLTLGYISLVIVLTVPALYERYEDYIDRYVMMGYRKLQL 185

Query: 599 FYVKLDAG-LSKIRTLILEKRK 661
            Y+KLD   +SK++  ILEKRK
Sbjct: 186 LYMKLDEECISKVQKWILEKRK 207


>ref|XP_004137740.1| PREDICTED: reticulon-like protein B12-like [Cucumis sativus]
           gi|449483434|ref|XP_004156590.1| PREDICTED:
           reticulon-like protein B12-like [Cucumis sativus]
          Length = 209

 Score =  233 bits (593), Expect = 9e-59
 Identities = 109/194 (56%), Positives = 151/194 (77%), Gaps = 1/194 (0%)
 Frame = +2

Query: 83  LDQILGESLIADVMLWRRREVTVGILLVTVSTWLVFEKSGYXXXXXXXXXXXXXXXILFL 262
           L +I+G  ++ADV+LWRR+ +T+GILL+T++TWLVFE+ GY               I+FL
Sbjct: 14  LHEIVGGGIVADVILWRRKNLTMGILLITLATWLVFERCGYTLLSLISSVLLLLVTIIFL 73

Query: 263 WAKSAQILNRPAPPLPDLQLSEDVINEAAAFIRAHVNTLLAVSRDVTLGKDSKLFFKVAA 442
           WAKSA ILNRPAPPLP+L LSED++NEAA+FIR+ VN  L+V++D+ +GKD +LFFKVAA
Sbjct: 74  WAKSASILNRPAPPLPELYLSEDMVNEAASFIRSRVNAFLSVTQDIAMGKDPRLFFKVAA 133

Query: 443 CMWLISVVGGWTDLLTLGYTSVVVLLTVPALYQKYEDQIDKYVIMAYKELQRFYVKLD-A 619
           C+WLISV+ G TD++TL YTS++++LT+PALY+KYED +D++ I+ YK+L +FYVKLD  
Sbjct: 134 CLWLISVISGLTDMITLAYTSLLLVLTIPALYEKYEDYVDRHAILMYKKLYQFYVKLDEM 193

Query: 620 GLSKIRTLILEKRK 661
            +   +  ILEK K
Sbjct: 194 RVLTYQQWILEKEK 207


>ref|XP_003516933.1| PREDICTED: reticulon-like protein B12-like [Glycine max]
          Length = 209

 Score =  227 bits (579), Expect = 4e-57
 Identities = 114/202 (56%), Positives = 150/202 (74%), Gaps = 4/202 (1%)
 Frame = +2

Query: 68  RLFNR---LDQILGESLIADVMLWRRREVTVGILLVTVSTWLVFEKSGYXXXXXXXXXXX 238
           RLFNR   L +ILG   +AD++LWRR+ +TVGILLVT+  W+VFE+SGY           
Sbjct: 6   RLFNRQRGLHEILGGGQVADLILWRRKNLTVGILLVTLGVWVVFERSGYTLLSLISNVLL 65

Query: 239 XXXXILFLWAKSAQILNRPAPPLPDLQLSEDVINEAAAFIRAHVNTLLAVSRDVTLGKDS 418
               ILFLWAKSA ILNRPAPPLP L+LSE++ NEA  FI   VN LL+VS+D+ LGKDS
Sbjct: 66  LLIVILFLWAKSADILNRPAPPLPQLRLSEEMANEAKTFICTRVNDLLSVSQDIALGKDS 125

Query: 419 KLFFKVAACMWLISVVGGWTDLLTLGYTSVVVLLTVPALYQKYEDQIDKYVIMAYKELQR 598
           +LF KVAA +WLIS++GG TD LTL YTS++++LTVPA+Y++YED ID Y++  Y++L  
Sbjct: 126 RLFLKVAAYLWLISIIGGLTDFLTLAYTSLLLVLTVPAIYERYEDYIDMYILKGYRKLCL 185

Query: 599 FYVKLDAG-LSKIRTLILEKRK 661
            +VK++ G +SK+   ILEK+K
Sbjct: 186 LHVKINEGYVSKVHNWILEKKK 207


>ref|XP_003520935.1| PREDICTED: reticulon-like protein B12-like [Glycine max]
          Length = 209

 Score =  224 bits (572), Expect = 2e-56
 Identities = 111/202 (54%), Positives = 149/202 (73%), Gaps = 4/202 (1%)
 Frame = +2

Query: 68  RLFNR---LDQILGESLIADVMLWRRREVTVGILLVTVSTWLVFEKSGYXXXXXXXXXXX 238
           RLFNR   L +ILG   +AD++LWRR+ +TVGILLVT++ W+VFE+SGY           
Sbjct: 6   RLFNRQRSLHEILGGGQVADLILWRRKNLTVGILLVTLAVWVVFERSGYTLLSLVSNVLL 65

Query: 239 XXXXILFLWAKSAQILNRPAPPLPDLQLSEDVINEAAAFIRAHVNTLLAVSRDVTLGKDS 418
               ILFLWAKSA ILNRPAPPLP L LSE++ NE   FIR  VN LL+VS+D+ LGKDS
Sbjct: 66  LLIVILFLWAKSAAILNRPAPPLPQLHLSEEMANEVKTFIRTRVNDLLSVSQDIALGKDS 125

Query: 419 KLFFKVAACMWLISVVGGWTDLLTLGYTSVVVLLTVPALYQKYEDQIDKYVIMAYKELQR 598
           +LF KVAA +W+IS++GG TD LTL YTS+ ++LTVPA+Y++YED IDKY++  Y++L  
Sbjct: 126 RLFLKVAAYLWIISIIGGLTDFLTLAYTSLFIVLTVPAIYERYEDYIDKYILKGYRKLCL 185

Query: 599 FYVKL-DAGLSKIRTLILEKRK 661
            ++K+ +  ++K+   ILEK+K
Sbjct: 186 LHLKINEQYVNKVHNWILEKKK 207


>ref|XP_002527867.1| 3-beta-hydroxy-delta5-steroid dehydrogenase, putative [Ricinus
           communis] gi|223532718|gb|EEF34498.1|
           3-beta-hydroxy-delta5-steroid dehydrogenase, putative
           [Ricinus communis]
          Length = 209

 Score =  221 bits (564), Expect = 2e-55
 Identities = 113/202 (55%), Positives = 149/202 (73%), Gaps = 4/202 (1%)
 Frame = +2

Query: 68  RLFNR---LDQILGESLIADVMLWRRREVTVGILLVTVSTWLVFEKSGYXXXXXXXXXXX 238
           RLFNR   + +ILG  L+ADV+LWR++ VT GILL  +++W+VFE+SGY           
Sbjct: 6   RLFNRQTTVHEILGGGLVADVILWRQKNVTGGILLAALASWVVFERSGYTLLSLFSSVVL 65

Query: 239 XXXXILFLWAKSAQILNRPAPPLPDLQLSEDVINEAAAFIRAHVNTLLAVSRDVTLGKDS 418
               ILFLWAKSA ILNRPAPPLP+L LSE++ NE A+FIR HVN  L+VS+D+ LGKD+
Sbjct: 66  LLVAILFLWAKSAAILNRPAPPLPELHLSEEMANEVASFIRTHVNDFLSVSQDIALGKDT 125

Query: 419 KLFFKVAACMWLISVVGGWTDLLTLGYTSVVVLLTVPALYQKYEDQIDKYVIMAYKELQR 598
           +LFFKVA  + LIS+VGG TD ++L YTS+V+ LT+PALY+++ED IDKYV M Y++ Q+
Sbjct: 126 RLFFKVAGYLLLISIVGGLTDFVSLCYTSLVITLTIPALYERHEDFIDKYVKMGYEKSQQ 185

Query: 599 FYVKLDAG-LSKIRTLILEKRK 661
            YV  D   + +IR  ILEK+K
Sbjct: 186 LYVNFDVECIGRIRKWILEKQK 207


Top