BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00021974
         (1757 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003616769.1| F-box/LRR-repeat protein [Medicago truncatul...    88   1e-19
emb|CAN74740.1| hypothetical protein VITISV_040899 [Vitis vinifera]   102   4e-19
ref|NP_186954.1| F-box protein [Arabidopsis thaliana] gi|7526377...    99   4e-18
ref|NP_192778.2| F-box protein [Arabidopsis thaliana] gi|1453330...    98   6e-18
emb|CAB39793.1| putative protein [Arabidopsis thaliana] gi|72677...    98   6e-18

>ref|XP_003616769.1| F-box/LRR-repeat protein [Medicago truncatula]
            gi|355518104|gb|AES99727.1| F-box/LRR-repeat protein
            [Medicago truncatula]
          Length = 436

 Score = 87.8 bits (216), Expect(2) = 1e-19
 Identities = 84/298 (28%), Positives = 132/298 (44%), Gaps = 3/298 (1%)
 Frame = -1

Query: 1697 KLDRISSLPELLRRHLISFLPMKDAIRVSVLSKNWRNLSTCLPNLEFDEEHYEGLKTKNE 1518
            ++DRISSL   +  +++SFLP K+AI  SVLS+ W +L T   +L F     E   T+N 
Sbjct: 11   QVDRISSLHNEVLANILSFLPTKEAIATSVLSRRWVSLWTLTNSLHFP----ENCPTRN- 65

Query: 1517 DLDDFEDMVDQTLNLHDKSDVQRFIVRINTAPISFRHLSSWISFAVRHNVQDLTISRIGG 1338
               +F  +V   L     S ++R    I+        +SS +  A +  V+++ +S    
Sbjct: 66   ---NFVQIVKSVLAQRKPSCMKRVSFSIHNNCYIPHLVSSIVCMASKQKVEEIDLSLYSL 122

Query: 1337 TIQNLPSCLFTCRTLVVLELF-NVRLKLPSVIRIPLLKSLNLSIVRLFDQNLTNKFLSSC 1161
             +  LP  +F C TLVVL+L     L LPS + +PLLK L+L I  + +     K     
Sbjct: 123  KVY-LPCEIFACETLVVLKLVGRFYLNLPSHLHLPLLKILHLCISCIVEDKALMKLFYG- 180

Query: 1160 CCPVLESLSMTCCAPDHNFSVTLSFSHXXXXXXXXXXXXXXLK--TNLSVTDFHISSING 987
             CPVLE L       D  F  +  F                 K   N  + ++ +     
Sbjct: 181  -CPVLEELYY----EDVEFKCSSLFGICVPTLKRLHVRSFDEKIHINTPLLEYLVLEETK 235

Query: 986  KENFSIQNLSSVAIARIGLFPPCTSSNDANNEFCDNYARKILSGLHNVKKLKF*GFLC 813
              N+ ++NL+ +  ARIG++       D  N+        +L+G+H  +      FLC
Sbjct: 236  ASNYEVENLNKLKEARIGIY------FDHENKEVKQNISNLLNGIHKTR------FLC 281



 Score = 36.6 bits (83), Expect(2) = 1e-19
 Identities = 32/111 (28%), Positives = 49/111 (44%)
 Frame = -2

Query: 790 ELPTLQACCSLKHLQLNMHATKNQVQAITLLLRIYPNLQTLDILCYQGASPSSNKLNMEE 611
           E PT     +L +LQL +  T N    + LLL   PNL  L+I+       +  K     
Sbjct: 296 EFPTFN---NLGYLQLYLK-TFNSHFLVKLLLEKCPNLDVLEIIKVDDLCDNEIK----- 346

Query: 610 YWRTKELSTRNILKRLKEVQIRLHKGAEIELDLVRYLLGSADNLEKMSIKF 458
            W    +    +   L     R ++G + E +L+RY+L S   LE+ +I F
Sbjct: 347 -WAEPTIVPSCLSSHLTTFIFRDYEGTDEEFELIRYILKSGKVLERTTIYF 396


>emb|CAN74740.1| hypothetical protein VITISV_040899 [Vitis vinifera]
          Length = 607

 Score =  102 bits (253), Expect = 4e-19
 Identities = 71/205 (34%), Positives = 110/205 (53%), Gaps = 4/205 (1%)
 Frame = -1

Query: 1691 DRISSLPELLRRHLISFLPMKDAIRVSVLSKNWRNLSTCLPNLEFDEEHY---EGLKTKN 1521
            D IS+LP+ L  H++SFLP K A+  S+LSK WR L   +P L+FD+E +     L    
Sbjct: 10   DIISNLPDELLCHILSFLPTKFAVGTSILSKRWRYLWASVPILDFDDELWLNPSTLVELE 69

Query: 1520 EDLDDFEDMVDQTLNLHDKSDVQRFIVRINTAPISFRHLSSWISFAVRHNVQDLTISRIG 1341
            E +  F++ VD  L   + S +++F  R+     +   + SWI  A+   VQ+L +  + 
Sbjct: 70   ERIIMFQNFVDGVLRHSEVSCIKKF--RLGYRDNNLDSVYSWICIALERRVQELDLHLLI 127

Query: 1340 GTIQNLPSCLFTCRTLVVLEL-FNVRLKLPSVIRIPLLKSLNLSIVRLFDQNLTNKFLSS 1164
                 LP   F C+TLVV++L   + L +P+ + +P LK+L+L  V   D +   K LS 
Sbjct: 128  DWRVELPPMFFICKTLVVVKLSCALFLDIPTTVWLPSLKALHLKSVEYSDDDSIQKLLSG 187

Query: 1163 CCCPVLESLSMTCCAPDHNFSVTLS 1089
              CPVLE L +     D+ + V +S
Sbjct: 188  --CPVLEELVIEREERDNQWVVNVS 210


>ref|NP_186954.1| F-box protein [Arabidopsis thaliana]
            gi|75263775|sp|Q9LDJ9.1|FB133_ARATH RecName: Full=F-box
            protein At3g03040 gi|6714432|gb|AAF26120.1|AC012328_23
            unknown protein [Arabidopsis thaliana]
            gi|6728958|gb|AAF26956.1|AC018363_1 unknown protein
            [Arabidopsis thaliana] gi|332640374|gb|AEE73895.1| F-box
            protein [Arabidopsis thaliana]
          Length = 472

 Score = 99.0 bits (245), Expect = 4e-18
 Identities = 82/271 (30%), Positives = 135/271 (49%), Gaps = 16/271 (5%)
 Frame = -1

Query: 1694 LDRISSLPELLRRHLISFLPMKDAIRVSVLSKNWRNLSTCLPNLEFDEEHY----EGLKT 1527
            +D +SSLP+ +R  ++SFL  K++   SVLSK WRNL   +PNL+FD+  +    EG + 
Sbjct: 1    MDLLSSLPDEVRCLILSFLTTKESASTSVLSKKWRNLFALVPNLDFDDSEFLHPEEGKRE 60

Query: 1526 KNEDLDDFEDMVDQTLNLHDKSDVQRFIVRINTAPISFRHLSSWISFAVRHNVQDLTISR 1347
            ++  L  F D VD+ L+L   S +++F ++  T  +    ++ W+   ++ +V D+ ++ 
Sbjct: 61   RDGILQSFMDFVDRVLSLQGNSSIRKFSLKCETG-VPPARVNRWLCEVLQRDVSDIDLTI 119

Query: 1346 IGGTIQNLPSCLFTCRTLVVLEL---FNVRLKLPSV--IRIPLLKSLNLSIVRLFDQNLT 1182
              G    LP  LF   TLV L+L   FN+    P      +P+LKSL +  VR+F  +  
Sbjct: 120  DLGYGYYLPEELFVSETLVNLKLKSAFNIDW-WPGAEGTSLPMLKSLCVYGVRVFCDDEL 178

Query: 1181 NKFLSSCCCPVLESLSMT----CCAPDHNFSVTLSFSHXXXXXXXXXXXXXXLKTNL--- 1023
             + L   C PVLE L M+      + +   S TL+  H                 NL   
Sbjct: 179  QELLP--CFPVLEELQMSNMQWLDSDETVSSATLTTLHITGIRSENPKSISFDTPNLLSF 236

Query: 1022 SVTDFHISSINGKENFSIQNLSSVAIARIGL 930
              TDF        E++ + N+ ++++AR+ L
Sbjct: 237  VYTDF------VAEDYPLVNMKNLSLARLAL 261


>ref|NP_192778.2| F-box protein [Arabidopsis thaliana] gi|145333003|ref|NP_001078367.1|
            F-box protein [Arabidopsis thaliana]
            gi|142989615|sp|Q9SV82.2|FBD40_ARATH RecName:
            Full=FBD-associated F-box protein At4g10400
            gi|119935957|gb|ABM06044.1| At4g10400 [Arabidopsis
            thaliana] gi|332657476|gb|AEE82876.1| F-box protein
            [Arabidopsis thaliana] gi|332657477|gb|AEE82877.1| F-box
            protein [Arabidopsis thaliana]
          Length = 409

 Score = 98.2 bits (243), Expect = 6e-18
 Identities = 66/204 (32%), Positives = 106/204 (51%), Gaps = 3/204 (1%)
 Frame = -1

Query: 1694 LDRISSLPELLRRHLISFLPMKDAIRVSVLSKNWRNLSTCLPNLEFDEEHYEGLKTKNED 1515
            +DRIS LP+ +   ++SF+P K A+  S+LSK W  L   L  L+F  + Y   + K   
Sbjct: 1    MDRISGLPDEVLVKILSFVPTKVAVSTSILSKRWEFLWMWLTKLKFGSKRYSESEFKR-- 58

Query: 1514 LDDFEDMVDQTLNLHDKSDVQRFIVRINTAPISFRHLSSWISFAVRHNVQDLTI--SRIG 1341
                +  +D+ L LH    ++ F + ++ +      +  W+  AV   +++L I  S  G
Sbjct: 59   ---LQCFLDRNLPLHRAPVIESFRLVLSDSHFKPEDIRMWVVVAVSRYIRELKIYSSHYG 115

Query: 1340 GTIQNLPSCLFTCRTLVVLEL-FNVRLKLPSVIRIPLLKSLNLSIVRLFDQNLTNKFLSS 1164
                 LPS L+TC++LV+L+L   V L +P ++ +P LK+L L  VR F Q    + L  
Sbjct: 116  EKQNILPSSLYTCKSLVILKLDGGVLLDVPRMVCLPSLKTLELKGVRYFKQGSLQRLL-- 173

Query: 1163 CCCPVLESLSMTCCAPDHNFSVTL 1092
            C CPVLE L +     D+   +T+
Sbjct: 174  CNCPVLEDLVVNLSHHDNMGKLTV 197


>emb|CAB39793.1| putative protein [Arabidopsis thaliana] gi|7267737|emb|CAB78163.1|
            putative protein [Arabidopsis thaliana]
          Length = 326

 Score = 98.2 bits (243), Expect = 6e-18
 Identities = 66/204 (32%), Positives = 106/204 (51%), Gaps = 3/204 (1%)
 Frame = -1

Query: 1694 LDRISSLPELLRRHLISFLPMKDAIRVSVLSKNWRNLSTCLPNLEFDEEHYEGLKTKNED 1515
            +DRIS LP+ +   ++SF+P K A+  S+LSK W  L   L  L+F  + Y   + K   
Sbjct: 1    MDRISGLPDEVLVKILSFVPTKVAVSTSILSKRWEFLWMWLTKLKFGSKRYSESEFKR-- 58

Query: 1514 LDDFEDMVDQTLNLHDKSDVQRFIVRINTAPISFRHLSSWISFAVRHNVQDLTI--SRIG 1341
                +  +D+ L LH    ++ F + ++ +      +  W+  AV   +++L I  S  G
Sbjct: 59   ---LQCFLDRNLPLHRAPVIESFRLVLSDSHFKPEDIRMWVVVAVSRYIRELKIYSSHYG 115

Query: 1340 GTIQNLPSCLFTCRTLVVLEL-FNVRLKLPSVIRIPLLKSLNLSIVRLFDQNLTNKFLSS 1164
                 LPS L+TC++LV+L+L   V L +P ++ +P LK+L L  VR F Q    + L  
Sbjct: 116  EKQNILPSSLYTCKSLVILKLDGGVLLDVPRMVCLPSLKTLELKGVRYFKQGSLQRLL-- 173

Query: 1163 CCCPVLESLSMTCCAPDHNFSVTL 1092
            C CPVLE L +     D+   +T+
Sbjct: 174  CNCPVLEDLVVNLSHHDNMGKLTV 197