BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00021925
         (388 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAJ44361.1| putative DNA topoisomerase II [Malus x domestica]      72   5e-11
ref|XP_002314046.1| predicted protein [Populus trichocarpa] gi|2...    70   2e-10
ref|XP_002517802.1| DNA topoisomerase II, putative [Ricinus comm...    67   1e-09
ref|XP_002298421.1| predicted protein [Populus trichocarpa] gi|2...    67   1e-09
dbj|BAE06274.1| topoisomerase II [Scutellaria baicalensis]             67   1e-09

>emb|CAJ44361.1| putative DNA topoisomerase II [Malus x domestica]
          Length = 1467

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 47/103 (45%), Positives = 60/103 (58%), Gaps = 6/103 (5%)
 Frame = -3

Query: 371  QKLITDVLKPAEVG--SPDKKVRKLRPSPFNKKSSSVLGRIGDTEQXXXXXXXXXSP--- 207
            QKL+TD+LKPAE    SP+ KVRK+R SPFNKKS SV+GR+G  ++         SP   
Sbjct: 1360 QKLLTDMLKPAESSRASPEPKVRKMRASPFNKKSGSVMGRVGLADEMTESDDKVDSPSAE 1419

Query: 206  VDANEVVAAKPRPQRANRK-AAIVLXXXXXXXXXXXXEFDALD 81
              +   VAA+ RPQRANR+    VL            +FDA+D
Sbjct: 1420 ERSEAPVAARARPQRANRRQTRYVLSDSESEPASEDSDFDAVD 1462


>ref|XP_002314046.1| predicted protein [Populus trichocarpa] gi|222850454|gb|EEE88001.1|
            predicted protein [Populus trichocarpa]
          Length = 1482

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 42/79 (53%), Positives = 52/79 (65%), Gaps = 3/79 (3%)
 Frame = -3

Query: 377  LSQKLITDVLKPAEVG--SPDKKVRKLRPSPFNKKSSSVLGRIGDTEQXXXXXXXXXSPV 204
            L QKL+T++LKPAE    SP+KKVRK+R SPFNKKS SVLGRI   +          S  
Sbjct: 1374 LGQKLLTEMLKPAEGAGISPEKKVRKVRASPFNKKSGSVLGRIHKEDDTGSEPMSASSSE 1433

Query: 203  DANEV-VAAKPRPQRANRK 150
            + + + V A+ RPQRANRK
Sbjct: 1434 NTDVIDVPARARPQRANRK 1452


>ref|XP_002517802.1| DNA topoisomerase II, putative [Ricinus communis]
            gi|223543074|gb|EEF44609.1| DNA topoisomerase II,
            putative [Ricinus communis]
          Length = 1212

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 41/83 (49%), Positives = 52/83 (62%), Gaps = 7/83 (8%)
 Frame = -3

Query: 377  LSQKLITDVLKPAEVG--SPDKKVRKLRPSPFNKKSSSVLGRIGDTEQXXXXXXXXXSPV 204
            L QKL+T++LKPAE    SP+KKVRK+R SPFNKKS SVLGR+    +         S  
Sbjct: 1091 LGQKLLTEMLKPAENPGISPEKKVRKMRASPFNKKSGSVLGRVAKGSEATGSEEMSGSTS 1150

Query: 203  DANEV-----VAAKPRPQRANRK 150
             ++ +     V A+ RPQRANRK
Sbjct: 1151 TSSNMEEITEVPARARPQRANRK 1173


>ref|XP_002298421.1| predicted protein [Populus trichocarpa] gi|222845679|gb|EEE83226.1|
            predicted protein [Populus trichocarpa]
          Length = 1468

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 40/79 (50%), Positives = 52/79 (65%), Gaps = 3/79 (3%)
 Frame = -3

Query: 377  LSQKLITDVLKPAEVG--SPDKKVRKLRPSPFNKKSSSVLGRIGDTEQXXXXXXXXXSPV 204
            L Q+L+T++LKPAE    SP+KKVRK+R SPFNKKS S+LG I   +          +  
Sbjct: 1364 LGQQLLTEMLKPAEESGISPEKKVRKMRASPFNKKSGSLLGGIHKGDDTGIETMPASTSE 1423

Query: 203  DANEV-VAAKPRPQRANRK 150
            +A+ + V AK RPQRANRK
Sbjct: 1424 NADVIDVPAKARPQRANRK 1442


>dbj|BAE06274.1| topoisomerase II [Scutellaria baicalensis]
          Length = 1469

 Score = 67.0 bits (162), Expect = 1e-09
 Identities = 39/79 (49%), Positives = 51/79 (64%)
 Frame = -3

Query: 380  LLSQKLITDVLKPAEVGSPDKKVRKLRPSPFNKKSSSVLGRIGDTEQXXXXXXXXXSPVD 201
            L+ QKLIT+VLKPA   SP+KKVR++R SPFNKKSSS+LG+  + +          S ++
Sbjct: 1361 LVGQKLITEVLKPAADDSPEKKVRRMRESPFNKKSSSILGKTINIDDDDEEETSGTSSMN 1420

Query: 200  ANEVVAAKPRPQRANRKAA 144
                 AA  RP+RANR  A
Sbjct: 1421 EG---AAAARPKRANRGKA 1436