BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00021651
         (272 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002298160.1| predicted protein [Populus trichocarpa] gi|2...    67   2e-09
ref|XP_002265891.2| PREDICTED: replication factor C subunit 1-li...    65   7e-09
emb|CBI24290.3| unnamed protein product [Vitis vinifera]               65   7e-09
ref|XP_003527511.1| PREDICTED: replication factor C subunit 1-li...    64   2e-08
ref|XP_003540824.1| PREDICTED: replication factor C subunit 1-li...    63   3e-08

>ref|XP_002298160.1| predicted protein [Populus trichocarpa] gi|222845418|gb|EEE82965.1|
           predicted protein [Populus trichocarpa]
          Length = 550

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 41/90 (45%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
 Frame = +1

Query: 4   NNNATKTDPPPEKPLPTTSKQEKNV--SQDSSSRRKTSKYFANDGKKVKDEMETEKTPVK 177
           +N AT  +   +KP PT  K E  V   Q+ S RRKTSKYFA + +K K++ E E  P K
Sbjct: 18  DNAATNAE---KKPPPTEPKTETPVCGGQEGSGRRKTSKYFAANKQKQKEDKEIEDLPAK 74

Query: 178 RKTQKSSEQVHDDVKLPLAKKLHKGDDDED 267
           RK Q    Q    VK P +KK+HK DD+E+
Sbjct: 75  RKAQNDGVQ---SVKPPPSKKVHKVDDEEE 101


>ref|XP_002265891.2| PREDICTED: replication factor C subunit 1-like [Vitis vinifera]
          Length = 933

 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 40/81 (49%), Positives = 52/81 (64%), Gaps = 4/81 (4%)
 Frame = +1

Query: 40  KPLPTTSKQEKNV--SQDSSSRRKTSKYFANDGKKVKDEMETEKTPVKRKTQKSSEQVHD 213
           KP P T +QEK V   Q+SS RRKTSKYF    +K KDE E E+ P KRKTQK ++   +
Sbjct: 38  KPSPATVQQEKPVHGGQESSCRRKTSKYF----QKPKDEKEMEELPAKRKTQKGTK---E 90

Query: 214 DVKLPLAKKLHK--GDDDEDF 270
            +  P +KK+ +   DDD+DF
Sbjct: 91  SLNPPPSKKIRRVVDDDDDDF 111


>emb|CBI24290.3| unnamed protein product [Vitis vinifera]
          Length = 941

 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 40/81 (49%), Positives = 52/81 (64%), Gaps = 4/81 (4%)
 Frame = +1

Query: 40  KPLPTTSKQEKNV--SQDSSSRRKTSKYFANDGKKVKDEMETEKTPVKRKTQKSSEQVHD 213
           KP P T +QEK V   Q+SS RRKTSKYF    +K KDE E E+ P KRKTQK ++   +
Sbjct: 38  KPSPATVQQEKPVHGGQESSCRRKTSKYF----QKPKDEKEMEELPAKRKTQKGTK---E 90

Query: 214 DVKLPLAKKLHK--GDDDEDF 270
            +  P +KK+ +   DDD+DF
Sbjct: 91  SLNPPPSKKIRRVVDDDDDDF 111


>ref|XP_003527511.1| PREDICTED: replication factor C subunit 1-like [Glycine max]
          Length = 947

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 39/90 (43%), Positives = 51/90 (56%), Gaps = 10/90 (11%)
 Frame = +1

Query: 1   KNNNATKTDPPPEKPLPTTSKQEKNVS------QDSSSRRKTSKYFANDGKKVKDEMETE 162
           K NNA  + P  +KP     + EK V+      Q+SS RR TSKYF ++ +K KDE E +
Sbjct: 14  KGNNAASSKPSSDKP-----QSEKTVAFAVAGGQESSGRRITSKYFNSNKQKGKDEKEKQ 68

Query: 163 KTPVKRKTQKSSEQVH----DDVKLPLAKK 240
           + P KRK  K SE++H    DD  LP  KK
Sbjct: 69  ELPAKRKNAKDSEEIHEDDGDDSVLPTNKK 98


>ref|XP_003540824.1| PREDICTED: replication factor C subunit 1-like [Glycine max]
          Length = 1112

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 3/91 (3%)
 Frame = +1

Query: 1   KNNNATKTDPPPE-KPLPTTSKQEKNVS--QDSSSRRKTSKYFANDGKKVKDEMETEKTP 171
           K NNA  + P  + KP     + EK V+  Q+SS RR TSKYF ++ +K KD+ E ++ P
Sbjct: 175 KGNNAASSKPSNQPKPSSDKPQSEKTVAGGQESSGRRITSKYFNSNKQKGKDKKEMQELP 234

Query: 172 VKRKTQKSSEQVHDDVKLPLAKKLHKGDDDE 264
            KRK  K SE++      P  KK+H+ D D+
Sbjct: 235 AKRKNMKDSEEI------PEPKKIHEDDGDD 259