BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00021498
         (637 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001238343.1| transcription initiation factor IIB [Glycine...    84   2e-14
ref|XP_003519077.1| PREDICTED: transcription initiation factor I...    81   1e-13
gb|ABR16853.1| unknown [Picea sitchensis]                              75   8e-12
ref|XP_003625123.1| Transcription initiation factor IIB [Medicag...    75   1e-11
ref|XP_003521166.1| PREDICTED: transcription initiation factor I...    74   2e-11

>ref|NP_001238343.1| transcription initiation factor IIB [Glycine max]
           gi|1351222|sp|P48513.1|TF2B_SOYBN RecName:
           Full=Transcription initiation factor IIB; AltName:
           Full=General transcription factor TFIIB
           gi|945087|gb|AAB09756.1| transcription factor TFIIB
           [Glycine max]
          Length = 313

 Score = 84.3 bits (207), Expect = 2e-14
 Identities = 43/61 (70%), Positives = 46/61 (75%), Gaps = 11/61 (18%)
 Frame = +3

Query: 486 SSRGLVLEA-----------FANESGDNDPNRVGGPSNPLLTDGGLSTVISKPNGGGSSD 632
           S  GLVLE+           FANESGDNDPNRVGGPSNPLLTDGGLSTVI+KPNGGG  +
Sbjct: 27  SECGLVLESHSIDETSEWRTFANESGDNDPNRVGGPSNPLLTDGGLSTVIAKPNGGGGGE 86

Query: 633 F 635
           F
Sbjct: 87  F 87


>ref|XP_003519077.1| PREDICTED: transcription initiation factor IIB-like [Glycine max]
          Length = 314

 Score = 81.3 bits (199), Expect = 1e-13
 Identities = 42/57 (73%), Positives = 44/57 (77%), Gaps = 11/57 (19%)
 Frame = +3

Query: 486 SSRGLVLEA-----------FANESGDNDPNRVGGPSNPLLTDGGLSTVISKPNGGG 623
           S  GLVLE+           FANESGDNDPNRVGGPSNPLLTDGGLSTVI+KPNGGG
Sbjct: 27  SECGLVLESHSIDETSEWRTFANESGDNDPNRVGGPSNPLLTDGGLSTVIAKPNGGG 83


>gb|ABR16853.1| unknown [Picea sitchensis]
          Length = 313

 Score = 75.5 bits (184), Expect = 8e-12
 Identities = 42/58 (72%), Positives = 43/58 (74%), Gaps = 11/58 (18%)
 Frame = +3

Query: 495 GLVLEA-----------FANESGDNDPNRVGGPSNPLLTDGGLSTVISKPNGGGSSDF 635
           GLVLEA           FANE+GDNDP RVGGPSNPLLTDGGLSTVISKPN G S DF
Sbjct: 31  GLVLEAHSIDETSEWRTFANETGDNDPVRVGGPSNPLLTDGGLSTVISKPN-GASGDF 87


>ref|XP_003625123.1| Transcription initiation factor IIB [Medicago truncatula]
           gi|355500138|gb|AES81341.1| Transcription initiation
           factor IIB [Medicago truncatula]
          Length = 313

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 42/61 (68%), Positives = 44/61 (72%), Gaps = 11/61 (18%)
 Frame = +3

Query: 486 SSRGLVLEA-----------FANESGDNDPNRVGGPSNPLLTDGGLSTVISKPNGGGSSD 632
           S  GLVLE+           FANESGDNDP RVGGPSNPLLTDGGLSTVI+KPN G S D
Sbjct: 27  SECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPSNPLLTDGGLSTVIAKPN-GASGD 85

Query: 633 F 635
           F
Sbjct: 86  F 86


>ref|XP_003521166.1| PREDICTED: transcription initiation factor IIB-2-like [Glycine max]
          Length = 306

 Score = 74.3 bits (181), Expect = 2e-11
 Identities = 39/56 (69%), Positives = 42/56 (75%), Gaps = 11/56 (19%)
 Frame = +3

Query: 486 SSRGLVLEA-----------FANESGDNDPNRVGGPSNPLLTDGGLSTVISKPNGG 620
           S  GLVLE+           FANESGDNDP RVGGP+NPLLTDGGLSTVI+KPNGG
Sbjct: 27  SECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLTDGGLSTVIAKPNGG 82