BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00021394
         (514 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_189164.1| Ribonuclease H-like protein [Arabidopsis thalia...    59   3e-07
ref|XP_002468078.1| hypothetical protein SORBIDRAFT_01g039170 [S...    57   2e-06
emb|CAD41785.1| OSJNBa0035M09.1 [Oryza sativa Japonica Group] gi...    56   3e-06
ref|NP_194638.1| Ribonuclease H-like protein [Arabidopsis thalia...    56   3e-06

>ref|NP_189164.1| Ribonuclease H-like protein [Arabidopsis thaliana]
           gi|9294184|dbj|BAB02086.1| reverse transcriptase-like
           protein [Arabidopsis thaliana]
           gi|332643482|gb|AEE77003.1| Ribonuclease H-like protein
           [Arabidopsis thaliana]
          Length = 343

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 30/115 (26%), Positives = 64/115 (55%)
 Frame = -3

Query: 491 LPMGDMLAERKMKGDFACPYCLKEIETAEHLFFTCEWIRTMWFSSQVGMKMHKGGKLTLR 312
           L  GD L  R ++    C  C +E ET++HLFF C + + +W +S +  +  +   +T+ 
Sbjct: 39  LATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQQVWRASGIPHQELRTTGITME 98

Query: 311 ERMDIFLNWSCSTGTDQSLAGVHIAFLLQQIWKTRNEIKFENRRANRKRMIRESK 147
            +M++ L+ SC       L  + I ++L ++WK+RN++ F+ +  + +  ++ ++
Sbjct: 99  TKMELLLS-SCLANRQPQLFNLAI-WILWRLWKSRNQLVFQQKSISWQNTLQRAR 151


>ref|XP_002468078.1| hypothetical protein SORBIDRAFT_01g039170 [Sorghum bicolor]
           gi|241921932|gb|EER95076.1| hypothetical protein
           SORBIDRAFT_01g039170 [Sorghum bicolor]
          Length = 386

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
 Frame = -3

Query: 473 LAERKMKGDFACPYCLKEIETAEHLFFTCEWIRTMWFSSQVGMKMHKGGKLTLRE-RMDI 297
           L  R  + ++ C +C++ +ET  HLFF C + R++W   Q+       G L  R  R+D+
Sbjct: 253 LQARGWENNYFCAFCVRNLETTHHLFFECPFARSVW---QLAASWSSCGSLDPRGWRLDL 309

Query: 296 FL--NWSCSTGTDQSLAGVHIAFLLQQIWKTRNEIKFENRRANRKRMIRESKTLADKCML 123
            L  ++S + G  +      +   L  IW  RN I F +RR + + +  E + +A +  L
Sbjct: 310 DLEESFSQALGDGEKKGHTMLILTLWTIWNWRNAIIFRDRRTSVQAVFMEIQDMAQQWSL 369

Query: 122 A 120
           A
Sbjct: 370 A 370


>emb|CAD41785.1| OSJNBa0035M09.1 [Oryza sativa Japonica Group]
            gi|38346911|emb|CAE03883.2| OSJNBb0015N08.11 [Oryza
            sativa Japonica Group]
          Length = 1026

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
 Frame = -3

Query: 506  TK*QILPMGDMLAERKMKGDFACPYCLKEIETAEHLFFTCEWIRTMWFSSQVGMKMHKGG 327
            TK +IL   ++L     KGD  C +C K +ET +HLFF C   R +W      + +    
Sbjct: 861  TKNKILTKDNLLKRGWRKGDNKCQFCDK-VETVQHLFFDCPLARLIWNIIACALNVK--- 916

Query: 326  KLTLRERMDIFLNWSCSTGT-DQSLAGVHIAFLLQQIWKTRNEIKFENRRAN 174
               +  R D+F +W  S     ++L  V IA +L  IWK RN+  FE +  N
Sbjct: 917  --PVLSRQDLFGSWIQSMDKFTKNLVIVGIAAVLWSIWKCRNKACFERKLPN 966


>ref|NP_194638.1| Ribonuclease H-like protein [Arabidopsis thaliana]
           gi|4972055|emb|CAB43923.1| putative protein [Arabidopsis
           thaliana] gi|7269807|emb|CAB79667.1| putative protein
           [Arabidopsis thaliana] gi|67633766|gb|AAY78807.1|
           putative reverse transcriptase/RNA-dependent DNA
           polymerase [Arabidopsis thaliana]
           gi|332660185|gb|AEE85585.1| Ribonuclease H-like protein
           [Arabidopsis thaliana]
          Length = 575

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
 Frame = -3

Query: 491 LPMGDMLAERKMKGDFACPYCLKEIETAEHLFFTCEWIRTMWFSSQVGMKMHKGGKLTLR 312
           LP+   LA R +  + AC  C    ET  HL F C + R  W  S + + +  GG+    
Sbjct: 278 LPVAGALAYRHLSKESACIRCPSCKETVNHLLFKCTFARLTWAISSIPIPL--GGEWADS 335

Query: 311 ERMDIFLNWSCSTGTDQ-SLAGVHIAFLLQQIWKTRNEIKFENRRANRKRMIRESK 147
             ++++  ++   G  Q   A   + +LL ++WK RNE+ F  R  N + ++R ++
Sbjct: 336 IYVNLYWVFNLGNGNPQWEKASQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAE 391