BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00021270
         (294 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCI55279.1| PH01B001G05.2 [Phyllostachys edulis]                  127   7e-28
ref|ZP_10246603.1| putative RNA-directed DNA polymerase [Nitrola...   126   2e-27
gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]             124   6e-27
gb|AAD20101.1| putative retroelement pol polyprotein [Arabidopsi...   124   6e-27
gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]             123   2e-26

>emb|CCI55279.1| PH01B001G05.2 [Phyllostachys edulis]
          Length = 2097

 Score =  127 bits (320), Expect = 7e-28
 Identities = 56/97 (57%), Positives = 74/97 (76%)
 Frame = -2

Query: 293  FTDVNLECPKDSYPMPRVDELVDRTAGFSMFSFMDASMGYNQVAMYGPDQEKTSFVVEGG 114
            FTD+N  CPKD +P+PR+D+LVD T+G  + SF+DA  GY+Q++M   D+EKTSF+   G
Sbjct: 1128 FTDLNKACPKDDFPLPRIDQLVDSTSGCELLSFLDAYSGYHQISMCKEDEEKTSFITPYG 1187

Query: 113  TYCYTRMPFGLKNAGATFQRLGEKMFEGKIRKGIEIY 3
            TYCY +MPFGLKNAGATFQRL +K F  +I + +E Y
Sbjct: 1188 TYCYIKMPFGLKNAGATFQRLMQKTFSPQIGRNLEAY 1224


>ref|ZP_10246603.1| putative RNA-directed DNA polymerase [Nitrolancetus hollandicus Lb]
           gi|390170668|emb|CCF85946.1| putative RNA-directed DNA
           polymerase [Nitrolancetus hollandicus Lb]
          Length = 178

 Score =  126 bits (317), Expect = 2e-27
 Identities = 57/97 (58%), Positives = 71/97 (73%)
 Frame = -2

Query: 293 FTDVNLECPKDSYPMPRVDELVDRTAGFSMFSFMDASMGYNQVAMYGPDQEKTSFVVEGG 114
           FTD+N  CPKDS+P+P +D LV+ TAG  + +FMDA  GYNQ+ M   DQEKTSF+ + G
Sbjct: 26  FTDLNKACPKDSFPLPHIDRLVESTAGNELLTFMDAFSGYNQIMMNPEDQEKTSFITDRG 85

Query: 113 TYCYTRMPFGLKNAGATFQRLGEKMFEGKIRKGIEIY 3
            YCY  MPFGLKNAGAT+QRL  KMF   + K +E+Y
Sbjct: 86  IYCYKVMPFGLKNAGATYQRLVNKMFHNHLGKTMEVY 122


>gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]
          Length = 1838

 Score =  124 bits (312), Expect = 6e-27
 Identities = 56/97 (57%), Positives = 71/97 (73%)
 Frame = -2

Query: 293  FTDVNLECPKDSYPMPRVDELVDRTAGFSMFSFMDASMGYNQVAMYGPDQEKTSFVVEGG 114
            +TD+N  CPKDSYP+P +D LV+ T+G  + SFMDA  GYNQ+ M+  DQEKTSFV + G
Sbjct: 881  YTDLNKACPKDSYPLPHIDRLVEATSGNGLLSFMDAFSGYNQILMHKDDQEKTSFVTDRG 940

Query: 113  TYCYTRMPFGLKNAGATFQRLGEKMFEGKIRKGIEIY 3
            TYCY  M FGLKNAGAT+QR   KM   +I + +E+Y
Sbjct: 941  TYCYKVMSFGLKNAGATYQRFVNKMLADQIGRTVEVY 977


>gb|AAD20101.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 764

 Score =  124 bits (312), Expect = 6e-27
 Identities = 54/97 (55%), Positives = 72/97 (74%)
 Frame = -2

Query: 293 FTDVNLECPKDSYPMPRVDELVDRTAGFSMFSFMDASMGYNQVAMYGPDQEKTSFVVEGG 114
           FTD+N  CPKDS+P+P +D +V+ T G  + SFMDA  GYNQ+ M+  DQEKTSF+++ G
Sbjct: 554 FTDLNKACPKDSFPLPHIDRMVEATTGNELLSFMDAFSGYNQIPMHKDDQEKTSFIIDRG 613

Query: 113 TYCYTRMPFGLKNAGATFQRLGEKMFEGKIRKGIEIY 3
           TYCY  MPFGLKN GA +QRL  +MF  ++ K +E+Y
Sbjct: 614 TYCYKVMPFGLKNVGARYQRLVNQMFAPQLGKTMEVY 650


>gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]
          Length = 1103

 Score =  123 bits (308), Expect = 2e-26
 Identities = 56/97 (57%), Positives = 70/97 (72%)
 Frame = -2

Query: 293 FTDVNLECPKDSYPMPRVDELVDRTAGFSMFSFMDASMGYNQVAMYGPDQEKTSFVVEGG 114
           FTD+N  CPKDS+P+P +D LV+ TAG  + +FMDA  G NQ+ M   DQEKTSF+ + G
Sbjct: 78  FTDLNKACPKDSFPLPHIDRLVESTAGNELLTFMDAFSGSNQIMMNPEDQEKTSFITDRG 137

Query: 113 TYCYTRMPFGLKNAGATFQRLGEKMFEGKIRKGIEIY 3
            YCY  MPFGLKNAGAT+QRL  KMF   + K +E+Y
Sbjct: 138 IYCYKVMPFGLKNAGATYQRLVNKMFHNHLGKTMEVY 174