BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00021245
         (601 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280518.1| PREDICTED: pentatricopeptide repeat-containi...   288   4e-76
emb|CAN68786.1| hypothetical protein VITISV_024068 [Vitis vinife...   288   4e-76
ref|XP_003589614.1| Pentatricopeptide repeat-containing protein ...   270   1e-70
ref|XP_002299976.1| predicted protein [Populus trichocarpa] gi|2...   270   1e-70
ref|XP_003552899.1| PREDICTED: pentatricopeptide repeat-containi...   267   9e-70

>ref|XP_002280518.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62350-like [Vitis vinifera]
          Length = 248

 Score =  288 bits (738), Expect = 4e-76
 Identities = 138/163 (84%), Positives = 156/163 (95%)
 Frame = +2

Query: 2   KRLKSDGIRFDRFMKSQVSRLLRSDLVAVLAEVQRQDQVFLSIKIYDVVRKEIWYRPDMF 181
           KRL+SD +RFDRFM+S VSRLLRSDLV+VLAE QRQDQVFLS+K+YDVVRKEIWYRPDM+
Sbjct: 67  KRLRSDPVRFDRFMRSSVSRLLRSDLVSVLAEFQRQDQVFLSMKLYDVVRKEIWYRPDMY 126

Query: 182 FYRDMLMMLARNKRVDEIRQVREDLRREDVLFDQHTYGDIVRSFLDGGMPSEAMDLYEEM 361
           FYRDMLMMLARNK+VDE ++V EDL+RE+VLFDQHT+GDIVR+FLDGG+PSEAMD+YEEM
Sbjct: 127 FYRDMLMMLARNKKVDETKRVWEDLKREEVLFDQHTFGDIVRAFLDGGLPSEAMDIYEEM 186

Query: 362 RCSPDPPLSLPYRVILKGLIPYPELRERVKDDFLELFPDMIVY 490
           R SPDPPLSLPYRVILKGL+PYPELRE+VKDDFLELFP MIVY
Sbjct: 187 RRSPDPPLSLPYRVILKGLLPYPELREKVKDDFLELFPGMIVY 229


>emb|CAN68786.1| hypothetical protein VITISV_024068 [Vitis vinifera]
           gi|296083864|emb|CBI24252.3| unnamed protein product
           [Vitis vinifera]
          Length = 194

 Score =  288 bits (738), Expect = 4e-76
 Identities = 138/163 (84%), Positives = 156/163 (95%)
 Frame = +2

Query: 2   KRLKSDGIRFDRFMKSQVSRLLRSDLVAVLAEVQRQDQVFLSIKIYDVVRKEIWYRPDMF 181
           KRL+SD +RFDRFM+S VSRLLRSDLV+VLAE QRQDQVFLS+K+YDVVRKEIWYRPDM+
Sbjct: 13  KRLRSDPVRFDRFMRSSVSRLLRSDLVSVLAEFQRQDQVFLSMKLYDVVRKEIWYRPDMY 72

Query: 182 FYRDMLMMLARNKRVDEIRQVREDLRREDVLFDQHTYGDIVRSFLDGGMPSEAMDLYEEM 361
           FYRDMLMMLARNK+VDE ++V EDL+RE+VLFDQHT+GDIVR+FLDGG+PSEAMD+YEEM
Sbjct: 73  FYRDMLMMLARNKKVDETKRVWEDLKREEVLFDQHTFGDIVRAFLDGGLPSEAMDIYEEM 132

Query: 362 RCSPDPPLSLPYRVILKGLIPYPELRERVKDDFLELFPDMIVY 490
           R SPDPPLSLPYRVILKGL+PYPELRE+VKDDFLELFP MIVY
Sbjct: 133 RRSPDPPLSLPYRVILKGLLPYPELREKVKDDFLELFPGMIVY 175


>ref|XP_003589614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355478662|gb|AES59865.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 232

 Score =  270 bits (690), Expect = 1e-70
 Identities = 127/163 (77%), Positives = 150/163 (92%)
 Frame = +2

Query: 2   KRLKSDGIRFDRFMKSQVSRLLRSDLVAVLAEVQRQDQVFLSIKIYDVVRKEIWYRPDMF 181
           KRL+SD +R DRF++S VSRLL+SDLV+VL E  RQD VFLS+K+YD+VRKEIWYRPDMF
Sbjct: 48  KRLQSDPVRLDRFVRSNVSRLLKSDLVSVLFEFHRQDNVFLSMKLYDIVRKEIWYRPDMF 107

Query: 182 FYRDMLMMLARNKRVDEIRQVREDLRREDVLFDQHTYGDIVRSFLDGGMPSEAMDLYEEM 361
           FYRDMLMMLARNKRVDE ++V +DL+ E VLFDQHT+GDIVR++LD GMPSEAMD+YEEM
Sbjct: 108 FYRDMLMMLARNKRVDETKRVWDDLKGEGVLFDQHTFGDIVRAYLDSGMPSEAMDIYEEM 167

Query: 362 RCSPDPPLSLPYRVILKGLIPYPELRERVKDDFLELFPDMIVY 490
           R SP+PPLSLP+RVILKGLIPYPELRE++KDDFLE+FPDMI+Y
Sbjct: 168 RQSPEPPLSLPFRVILKGLIPYPELREKIKDDFLEVFPDMIIY 210


>ref|XP_002299976.1| predicted protein [Populus trichocarpa] gi|222847234|gb|EEE84781.1|
           predicted protein [Populus trichocarpa]
          Length = 194

 Score =  270 bits (690), Expect = 1e-70
 Identities = 129/163 (79%), Positives = 149/163 (91%)
 Frame = +2

Query: 2   KRLKSDGIRFDRFMKSQVSRLLRSDLVAVLAEVQRQDQVFLSIKIYDVVRKEIWYRPDMF 181
           KRL+S+ +R DRF+ S VSRLL+SDL+AVLAE QRQDQVFL +K+YDVVRKEIWYRPDMF
Sbjct: 13  KRLQSNPVRLDRFITSNVSRLLKSDLLAVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMF 72

Query: 182 FYRDMLMMLARNKRVDEIRQVREDLRREDVLFDQHTYGDIVRSFLDGGMPSEAMDLYEEM 361
            +RDMLMMLARNK+VDE  QV  DLRRE+VLFDQHT+GDI+R+FLD G+PS+AMD+YEEM
Sbjct: 73  LFRDMLMMLARNKKVDEANQVWRDLRREEVLFDQHTFGDIIRAFLDNGLPSKAMDIYEEM 132

Query: 362 RCSPDPPLSLPYRVILKGLIPYPELRERVKDDFLELFPDMIVY 490
           R SPDPP+SLP+RVILKGLIP+PELRE VKDDFLELFPDMIVY
Sbjct: 133 RQSPDPPISLPFRVILKGLIPFPELREEVKDDFLELFPDMIVY 175


>ref|XP_003552899.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62350-like [Glycine max]
          Length = 234

 Score =  267 bits (683), Expect = 9e-70
 Identities = 125/163 (76%), Positives = 149/163 (91%)
 Frame = +2

Query: 2   KRLKSDGIRFDRFMKSQVSRLLRSDLVAVLAEVQRQDQVFLSIKIYDVVRKEIWYRPDMF 181
           KR +SD +R DRF++S VSRLL+SDLVAVLAE QRQ+Q FL +K+YD+VRKEIWYRPDMF
Sbjct: 50  KRFRSDPVRLDRFIRSSVSRLLKSDLVAVLAEFQRQNQFFLCVKLYDIVRKEIWYRPDMF 109

Query: 182 FYRDMLMMLARNKRVDEIRQVREDLRREDVLFDQHTYGDIVRSFLDGGMPSEAMDLYEEM 361
           FYRDMLMMLARNKRV+E ++V  DL+ E+VLFDQHT+GDI+R+FLD G+PSEAMD+YEEM
Sbjct: 110 FYRDMLMMLARNKRVEEAKKVWGDLKTEEVLFDQHTFGDIIRAFLDNGLPSEAMDIYEEM 169

Query: 362 RCSPDPPLSLPYRVILKGLIPYPELRERVKDDFLELFPDMIVY 490
           R SP+PPLSLP+RVILKGLIPYPELRE+VKDDFLE+FP MI+Y
Sbjct: 170 RQSPEPPLSLPFRVILKGLIPYPELREKVKDDFLEIFPGMIIY 212