BLASTX nr result
ID: Coptis23_contig00021203
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00021203
(285 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002879404.1| pentatricopeptide repeat-containing protein ... 81 8e-14
ref|XP_002302937.1| predicted protein [Populus trichocarpa] gi|2... 80 1e-13
gb|AGF69112.1| PPR [Raphanus sativus] 80 2e-13
gb|AGF69111.1| PPR [Raphanus sativus] 80 2e-13
gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raph... 80 2e-13
>ref|XP_002879404.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297325243|gb|EFH55663.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 605
Score = 81.3 bits (199), Expect = 8e-14
Identities = 37/89 (41%), Positives = 57/89 (64%)
Frame = -2
Query: 272 MERNGLRANVVTYNSIIRHTCRERNLLEAKELFYSLSSKEVLPNTITYNTMINGFCKEGM 93
M G+R + V+Y ++I C+E N+ EAK LF +SSKEV PN ITYN MI +CK+G
Sbjct: 441 MMEGGVRLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKEVQPNAITYNVMIYAYCKQGK 500
Query: 92 LNDAQSLFIEMEMRGVSLVDYTFSIMVQG 6
+ +A+ L+ M+ G+ YT++ ++ G
Sbjct: 501 VKEARKLWANMKANGMDPDSYTYTSLIHG 529
Score = 67.8 bits (164), Expect = 9e-10
Identities = 31/94 (32%), Positives = 54/94 (57%)
Frame = -2
Query: 284 LIHAMERNGLRANVVTYNSIIRHTCRERNLLEAKELFYSLSSKEVLPNTITYNTMINGFC 105
L M G+ +++ Y S+I CR+ N+ A LF L+ K +LP++ TY +I+G C
Sbjct: 297 LFDEMRERGIESDIHVYTSLISWNCRKGNIKRAFLLFDELTEKGLLPSSHTYGALIDGVC 356
Query: 104 KEGMLNDAQSLFIEMEMRGVSLVDYTFSIMVQGF 3
K G + A+ L EM+ +GV++ F+ ++ G+
Sbjct: 357 KVGEMGAAEILMNEMQSKGVNITQVVFNTLINGY 390
Score = 56.6 bits (135), Expect = 2e-06
Identities = 28/90 (31%), Positives = 52/90 (57%)
Frame = -2
Query: 272 MERNGLRANVVTYNSIIRHTCRERNLLEAKELFYSLSSKEVLPNTITYNTMINGFCKEGM 93
ME+ G +A+V T N+I R + EAK+ + + V +T++Y +I+ +CKEG
Sbjct: 406 MEKKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVRLSTVSYTNLIDVYCKEGN 465
Query: 92 LNDAQSLFIEMEMRGVSLVDYTFSIMVQGF 3
+ +A+ LF+EM + V T+++M+ +
Sbjct: 466 VEEAKRLFVEMSSKEVQPNAITYNVMIYAY 495
>ref|XP_002302937.1| predicted protein [Populus trichocarpa] gi|222844663|gb|EEE82210.1|
predicted protein [Populus trichocarpa]
Length = 564
Score = 80.5 bits (197), Expect = 1e-13
Identities = 39/94 (41%), Positives = 58/94 (61%)
Frame = -2
Query: 284 LIHAMERNGLRANVVTYNSIIRHTCRERNLLEAKELFYSLSSKEVLPNTITYNTMINGFC 105
L M G+ ANVVTYN++I CRE + EA++L + V PN ITYNT+I GFC
Sbjct: 289 LFDEMRERGVEANVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFC 348
Query: 104 KEGMLNDAQSLFIEMEMRGVSLVDYTFSIMVQGF 3
G L+ A SL +++ G+S T++I+++G+
Sbjct: 349 DVGNLDKASSLLDQLKSNGLSPSLVTYNILIEGY 382
Score = 63.2 bits (152), Expect = 2e-08
Identities = 32/94 (34%), Positives = 52/94 (55%)
Frame = -2
Query: 284 LIHAMERNGLRANVVTYNSIIRHTCRERNLLEAKELFYSLSSKEVLPNTITYNTMINGFC 105
L M+ NGL N+ TYN ++ C E + A +LF + + V N +TYNT+I G C
Sbjct: 254 LFEKMKINGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGVEANVVTYNTLIGGMC 313
Query: 104 KEGMLNDAQSLFIEMEMRGVSLVDYTFSIMVQGF 3
+E + +A+ L +M+ VS T++ ++ GF
Sbjct: 314 REERVWEAEKLVDQMKKAAVSPNLITYNTLIGGF 347
Score = 59.7 bits (143), Expect = 2e-07
Identities = 30/77 (38%), Positives = 45/77 (58%)
Frame = -2
Query: 275 AMERNGLRANVVTYNSIIRHTCRERNLLEAKELFYSLSSKEVLPNTITYNTMINGFCKEG 96
+ME+ GL +V Y +I C + N+ E+ +LF S+ V P+ + YNTMI+G+CKE
Sbjct: 432 SMEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLFRSMGEMHVEPSDVIYNTMIHGYCKED 491
Query: 95 MLNDAQSLFIEMEMRGV 45
A L EME +G+
Sbjct: 492 NSYRALRLLREMEAKGL 508
Score = 58.9 bits (141), Expect = 4e-07
Identities = 30/94 (31%), Positives = 50/94 (53%)
Frame = -2
Query: 284 LIHAMERNGLRANVVTYNSIIRHTCRERNLLEAKELFYSLSSKEVLPNTITYNTMINGFC 105
L+ M++ + N++TYN++I C NL +A L L S + P+ +TYN +I G+
Sbjct: 324 LVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYS 383
Query: 104 KEGMLNDAQSLFIEMEMRGVSLVDYTFSIMVQGF 3
K G L EME RG+S T ++++ +
Sbjct: 384 KAGNWKGVADLAREMEGRGISPSKVTCTVLIDAY 417
>gb|AGF69112.1| PPR [Raphanus sativus]
Length = 479
Score = 80.1 bits (196), Expect = 2e-13
Identities = 37/94 (39%), Positives = 57/94 (60%)
Frame = -2
Query: 284 LIHAMERNGLRANVVTYNSIIRHTCRERNLLEAKELFYSLSSKEVLPNTITYNTMINGFC 105
L M G+ + VTY+S+I C++ L EA ++F S+ SK PN +T+NT+I G+C
Sbjct: 325 LYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYC 384
Query: 104 KEGMLNDAQSLFIEMEMRGVSLVDYTFSIMVQGF 3
K GM++D LF EM RG+ T+ +++GF
Sbjct: 385 KAGMVDDGLELFCEMGRRGIVANAITYITLIRGF 418
Score = 68.2 bits (165), Expect = 7e-10
Identities = 31/87 (35%), Positives = 53/87 (60%)
Frame = -2
Query: 263 NGLRANVVTYNSIIRHTCRERNLLEAKELFYSLSSKEVLPNTITYNTMINGFCKEGMLND 84
NG+ +V TYN +I E LEA+EL+ + + ++P+T+TY++MING CK+ L++
Sbjct: 297 NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDE 356
Query: 83 AQSLFIEMEMRGVSLVDYTFSIMVQGF 3
A +F M + S TF+ ++ G+
Sbjct: 357 ATQMFDSMGSKSFSPNIVTFNTLITGY 383
Score = 62.0 bits (149), Expect = 5e-08
Identities = 31/95 (32%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Frame = -2
Query: 284 LIHAMERNGLRANVVTYNSIIRHTCRERNLLEAKELFYSLSS-KEVLPNTITYNTMINGF 108
L+ M +GL+ N +TY +I+ C+ + + A L + + P+ + Y+ +I+G
Sbjct: 103 LLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGL 162
Query: 107 CKEGMLNDAQSLFIEMEMRGVSLVDYTFSIMVQGF 3
K+G DAQ+LFIEM+ +G+ T+S M+ GF
Sbjct: 163 WKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGF 197
Score = 59.3 bits (142), Expect = 3e-07
Identities = 30/86 (34%), Positives = 51/86 (59%)
Frame = -2
Query: 269 ERNGLRANVVTYNSIIRHTCRERNLLEAKELFYSLSSKEVLPNTITYNTMINGFCKEGML 90
E + ++ +VV Y++II ++ +A+ LF + K + P+ +TY+ MINGFC G
Sbjct: 144 ELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKW 203
Query: 89 NDAQSLFIEMEMRGVSLVDYTFSIMV 12
++AQ L EM +R +S TFS ++
Sbjct: 204 SEAQRLLQEMLVRKISPDVVTFSGLI 229
>gb|AGF69111.1| PPR [Raphanus sativus]
Length = 479
Score = 80.1 bits (196), Expect = 2e-13
Identities = 37/94 (39%), Positives = 57/94 (60%)
Frame = -2
Query: 284 LIHAMERNGLRANVVTYNSIIRHTCRERNLLEAKELFYSLSSKEVLPNTITYNTMINGFC 105
L M G+ + VTY+S+I C++ L EA ++F S+ SK PN +T+NT+I G+C
Sbjct: 325 LYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYC 384
Query: 104 KEGMLNDAQSLFIEMEMRGVSLVDYTFSIMVQGF 3
K GM++D LF EM RG+ T+ +++GF
Sbjct: 385 KAGMVDDGLELFCEMGRRGIVANAITYITLIRGF 418
Score = 68.2 bits (165), Expect = 7e-10
Identities = 31/87 (35%), Positives = 53/87 (60%)
Frame = -2
Query: 263 NGLRANVVTYNSIIRHTCRERNLLEAKELFYSLSSKEVLPNTITYNTMINGFCKEGMLND 84
NG+ +V TYN +I E LEA+EL+ + + ++P+T+TY++MING CK+ L++
Sbjct: 297 NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDE 356
Query: 83 AQSLFIEMEMRGVSLVDYTFSIMVQGF 3
A +F M + S TF+ ++ G+
Sbjct: 357 ATQMFDSMGSKSFSPNIVTFNTLITGY 383
Score = 62.0 bits (149), Expect = 5e-08
Identities = 31/95 (32%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Frame = -2
Query: 284 LIHAMERNGLRANVVTYNSIIRHTCRERNLLEAKELFYSLSS-KEVLPNTITYNTMINGF 108
L+ M +GL+ N +TY +I+ C+ + + A L + + P+ + Y+ +I+G
Sbjct: 103 LLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGL 162
Query: 107 CKEGMLNDAQSLFIEMEMRGVSLVDYTFSIMVQGF 3
K+G DAQ+LFIEM+ +G+ T+S M+ GF
Sbjct: 163 WKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGF 197
Score = 59.3 bits (142), Expect = 3e-07
Identities = 30/86 (34%), Positives = 51/86 (59%)
Frame = -2
Query: 269 ERNGLRANVVTYNSIIRHTCRERNLLEAKELFYSLSSKEVLPNTITYNTMINGFCKEGML 90
E + ++ +VV Y++II ++ +A+ LF + K + P+ +TY+ MINGFC G
Sbjct: 144 ELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKW 203
Query: 89 NDAQSLFIEMEMRGVSLVDYTFSIMV 12
++AQ L EM +R +S TFS ++
Sbjct: 204 SEAQRLLQEMLVRKISPDVVTFSGLI 229
>gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
Length = 654
Score = 80.1 bits (196), Expect = 2e-13
Identities = 36/94 (38%), Positives = 55/94 (58%)
Frame = -2
Query: 284 LIHAMERNGLRANVVTYNSIIRHTCRERNLLEAKELFYSLSSKEVLPNTITYNTMINGFC 105
L M G+ + +TYNS+I C++ L EA ++F S+ SK PN +T+ T+ING+C
Sbjct: 499 LYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYC 558
Query: 104 KEGMLNDAQSLFIEMEMRGVSLVDYTFSIMVQGF 3
K G ++D LF EM RG+ T+ ++ GF
Sbjct: 559 KAGRVDDGLELFCEMGRRGIVANAITYITLIHGF 592
Score = 72.0 bits (175), Expect = 5e-11
Identities = 33/90 (36%), Positives = 58/90 (64%)
Frame = -2
Query: 272 MERNGLRANVVTYNSIIRHTCRERNLLEAKELFYSLSSKEVLPNTITYNTMINGFCKEGM 93
+ER + +VVTYN++I +E EA+EL+ + + ++P+TITY++MI+GFCK+
Sbjct: 282 LERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNR 341
Query: 92 LNDAQSLFIEMEMRGVSLVDYTFSIMVQGF 3
L+ A+ +F M +G S TF+ ++ G+
Sbjct: 342 LDAAEHMFYLMATKGCSPDIITFNTLIAGY 371
Score = 67.4 bits (163), Expect = 1e-09
Identities = 31/87 (35%), Positives = 53/87 (60%)
Frame = -2
Query: 263 NGLRANVVTYNSIIRHTCRERNLLEAKELFYSLSSKEVLPNTITYNTMINGFCKEGMLND 84
NG+ +V TYN +I E LEA+EL+ + + ++P+TITYN++I+G CK+ L++
Sbjct: 471 NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDE 530
Query: 83 AQSLFIEMEMRGVSLVDYTFSIMVQGF 3
A +F M + S TF+ ++ G+
Sbjct: 531 ATQMFDSMGSKSFSPNVVTFTTLINGY 557
Score = 62.8 bits (151), Expect = 3e-08
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 11/104 (10%)
Frame = -2
Query: 284 LIHAMERNGLRANVVTYNSIIRHTCRERNLLEAKELFYSLSSKEVLPNTITYNTMINGFC 105
L+H M GL AN +TY ++I C+ +L A++L + S V PN +T NT+++G C
Sbjct: 383 LLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLC 442
Query: 104 KEGMLNDAQSLFIEME-----------MRGVSLVDYTFSIMVQG 6
G L DA +F M+ GV T++I++ G
Sbjct: 443 DNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISG 486
Score = 61.6 bits (148), Expect = 6e-08
Identities = 30/93 (32%), Positives = 53/93 (56%)
Frame = -2
Query: 284 LIHAMERNGLRANVVTYNSIIRHTCRERNLLEAKELFYSLSSKEVLPNTITYNTMINGFC 105
+ + M G +++T+N++I CR + + + +L + ++ ++ NTITY T+I+GFC
Sbjct: 348 MFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFC 407
Query: 104 KEGMLNDAQSLFIEMEMRGVSLVDYTFSIMVQG 6
+ G LN AQ L EM GV T + ++ G
Sbjct: 408 QVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDG 440
Score = 60.5 bits (145), Expect = 1e-07
Identities = 29/94 (30%), Positives = 53/94 (56%)
Frame = -2
Query: 284 LIHAMERNGLRANVVTYNSIIRHTCRERNLLEAKELFYSLSSKEVLPNTITYNTMINGFC 105
L M G+ + +TY+S+I C++ L A+ +FY +++K P+ IT+NT+I G+C
Sbjct: 313 LYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYC 372
Query: 104 KEGMLNDAQSLFIEMEMRGVSLVDYTFSIMVQGF 3
+ ++D L EM G+ T++ ++ GF
Sbjct: 373 RAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGF 406