BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00021202
         (510 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004168984.1| PREDICTED: pentatricopeptide repeat-containi...    72   4e-11
ref|XP_004146598.1| PREDICTED: pentatricopeptide repeat-containi...    72   4e-11
ref|XP_002531596.1| pentatricopeptide repeat-containing protein,...    71   1e-10
ref|XP_004168986.1| PREDICTED: pentatricopeptide repeat-containi...    70   2e-10
ref|XP_004146650.1| PREDICTED: pentatricopeptide repeat-containi...    70   2e-10

>ref|XP_004168984.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial-like [Cucumis sativus]
          Length = 461

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 31/60 (51%), Positives = 47/60 (78%)
 Frame = -3

Query: 394 YQSNSRENLYQRIAPLGDPNVSMVPVLEKWAEEVKSVTREVLTSIIRELRVYSRYKHALE 215
           Y +  ++NLY+RI+P+GDPN+S+ P+L++W  E + V ++ L  II+ELRVY R+KHALE
Sbjct: 23  YSTVVKDNLYRRISPVGDPNISVTPLLDQWVLEGRLVQQDELRHIIKELRVYKRFKHALE 82


>ref|XP_004146598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial-like [Cucumis sativus]
          Length = 227

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 31/60 (51%), Positives = 47/60 (78%)
 Frame = -3

Query: 394 YQSNSRENLYQRIAPLGDPNVSMVPVLEKWAEEVKSVTREVLTSIIRELRVYSRYKHALE 215
           Y +  ++NLY+RI+P+GDPN+S+ P+L++W  E + V ++ L  II+ELRVY R+KHALE
Sbjct: 23  YSTVVKDNLYRRISPVGDPNISVTPLLDQWVLEGRLVQQDELRHIIKELRVYKRFKHALE 82


>ref|XP_002531596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223528792|gb|EEF30799.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 300

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 38/100 (38%), Positives = 60/100 (60%), Gaps = 3/100 (3%)
 Frame = -3

Query: 463 NALFYTAETSSSRTRTPIGAKPKYQSNSRENL---YQRIAPLGDPNVSMVPVLEKWAEEV 293
           ++LFY+         TP  ++  ++   ++NL   Y+RI+P+GDP VS+VP+L++W EE 
Sbjct: 25  SSLFYST--------TPTSSQKWFRERGKDNLNQLYRRISPVGDPKVSIVPILDQWIEEG 76

Query: 292 KSVTREVLTSIIRELRVYSRYKHALESITYRKER*VAAAT 173
           KSV ++ L   I+ELR   RY HALE   +  ++   A T
Sbjct: 77  KSVNKDQLQVFIKELRYCKRYTHALEISMWMSDKRYFALT 116


>ref|XP_004168986.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial-like [Cucumis sativus]
          Length = 191

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 31/64 (48%), Positives = 47/64 (73%)
 Frame = -3

Query: 394 YQSNSRENLYQRIAPLGDPNVSMVPVLEKWAEEVKSVTREVLTSIIRELRVYSRYKHALE 215
           Y +  +++LY+RI+P+GDPN+S+ P+L++W  E   V ++ L  II+ELRVY R+KHALE
Sbjct: 23  YSTVVKDSLYRRISPVGDPNISVTPLLDQWVLESGLVQQDELRHIIKELRVYKRFKHALE 82

Query: 214 SITY 203
              Y
Sbjct: 83  VEDY 86


>ref|XP_004146650.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial-like [Cucumis sativus]
          Length = 222

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 31/64 (48%), Positives = 47/64 (73%)
 Frame = -3

Query: 394 YQSNSRENLYQRIAPLGDPNVSMVPVLEKWAEEVKSVTREVLTSIIRELRVYSRYKHALE 215
           Y +  +++LY+RI+P+GDPN+S+ P+L++W  E   V ++ L  II+ELRVY R+KHALE
Sbjct: 23  YSTVVKDSLYRRISPVGDPNISVTPLLDQWVLESGLVQQDELRHIIKELRVYKRFKHALE 82

Query: 214 SITY 203
              Y
Sbjct: 83  VEDY 86