BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00021200
         (273 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002523296.1| pentatricopeptide repeat-containing protein,...   124   6e-27
ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containi...   120   1e-25
emb|CBI40590.3| unnamed protein product [Vitis vinifera]              120   1e-25
emb|CAN66974.1| hypothetical protein VITISV_022076 [Vitis vinifera]   120   1e-25
ref|XP_002301427.1| predicted protein [Populus trichocarpa] gi|2...   116   2e-24

>ref|XP_002523296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223537384|gb|EEF39012.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 353

 Score =  124 bits (312), Expect = 6e-27
 Identities = 57/89 (64%), Positives = 74/89 (83%)
 Frame = -1

Query: 267 ARKVFDEMSGDRDLPAWNSMITGYTRCGDLAEARRLFELMPRRNVVSWTAMISGYSQNER 88
           A +VFDE+   RD+P WN++I GY+RCGD+  A ++F+LMP RNVVSWTAMISGYSQN R
Sbjct: 136 AHRVFDEIPV-RDIPTWNALIAGYSRCGDMEGALKIFKLMPDRNVVSWTAMISGYSQNGR 194

Query: 87  YEDALEIYMRMEAEKGVKPNEVTIASVLP 1
           Y  ALE++++ME E G++PNEVTIAS+LP
Sbjct: 195 YAKALELFLKMEKENGLRPNEVTIASILP 223



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 31/79 (39%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
 Frame = -1

Query: 234 RDLPAWNSMITGYTRCGDLAEARRLFELM--PRRNVVSWTAMISGYSQNERYEDALEIYM 61
           R+L   N+++  Y RCG +  AR++F+ +   RRN+ SW +MI G + + R  DAL +Y 
Sbjct: 248 RNLYVSNALLEMYARCGKIDMARKVFDKIIGKRRNLCSWNSMIMGLAIHGRSHDALHLYN 307

Query: 60  RMEAEKGVKPNEVTIASVL 4
           RM  E G+ P++VT   +L
Sbjct: 308 RMLIE-GIAPDDVTFVGIL 325


>ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Vitis vinifera]
          Length = 512

 Score =  120 bits (300), Expect = 1e-25
 Identities = 59/90 (65%), Positives = 69/90 (76%)
 Frame = -1

Query: 270 LARKVFDEMSGDRDLPAWNSMITGYTRCGDLAEARRLFELMPRRNVVSWTAMISGYSQNE 91
           LARK FDEM+  RD+P WNSMI GY RCGDL  A  LF LMP RNV SWTAMISGY+QN 
Sbjct: 135 LARKQFDEMTV-RDVPTWNSMIAGYARCGDLEGALELFRLMPARNVTSWTAMISGYAQNG 193

Query: 90  RYEDALEIYMRMEAEKGVKPNEVTIASVLP 1
           +Y  AL +++ ME E  ++PNEVT+ASVLP
Sbjct: 194 QYAKALSMFLMMEEETEMRPNEVTLASVLP 223


>emb|CBI40590.3| unnamed protein product [Vitis vinifera]
          Length = 495

 Score =  120 bits (300), Expect = 1e-25
 Identities = 59/90 (65%), Positives = 69/90 (76%)
 Frame = -1

Query: 270 LARKVFDEMSGDRDLPAWNSMITGYTRCGDLAEARRLFELMPRRNVVSWTAMISGYSQNE 91
           LARK FDEM+  RD+P WNSMI GY RCGDL  A  LF LMP RNV SWTAMISGY+QN 
Sbjct: 135 LARKQFDEMTV-RDVPTWNSMIAGYARCGDLEGALELFRLMPARNVTSWTAMISGYAQNG 193

Query: 90  RYEDALEIYMRMEAEKGVKPNEVTIASVLP 1
           +Y  AL +++ ME E  ++PNEVT+ASVLP
Sbjct: 194 QYAKALSMFLMMEEETEMRPNEVTLASVLP 223


>emb|CAN66974.1| hypothetical protein VITISV_022076 [Vitis vinifera]
          Length = 967

 Score =  120 bits (300), Expect = 1e-25
 Identities = 59/90 (65%), Positives = 69/90 (76%)
 Frame = -1

Query: 270 LARKVFDEMSGDRDLPAWNSMITGYTRCGDLAEARRLFELMPRRNVVSWTAMISGYSQNE 91
           LARK FDEM+  RD+P WNSMI GY RCGDL  A  LF LMP RNV SWTAMISGY+QN 
Sbjct: 620 LARKQFDEMTV-RDVPTWNSMIAGYARCGDLEGALELFRLMPARNVTSWTAMISGYAQNG 678

Query: 90  RYEDALEIYMRMEAEKGVKPNEVTIASVLP 1
           +Y  AL +++ ME E  ++PNEVT+ASVLP
Sbjct: 679 QYAKALSMFLMMEEETEMRPNEVTLASVLP 708


>ref|XP_002301427.1| predicted protein [Populus trichocarpa] gi|222843153|gb|EEE80700.1|
           predicted protein [Populus trichocarpa]
          Length = 442

 Score =  116 bits (291), Expect = 2e-24
 Identities = 57/88 (64%), Positives = 71/88 (80%)
 Frame = -1

Query: 270 LARKVFDEMSGDRDLPAWNSMITGYTRCGDLAEARRLFELMPRRNVVSWTAMISGYSQNE 91
           LAR+VFDEM+  RD+P WNS+I GY+R GD+  A  LF+LMP R+VVSWT MISGYSQN 
Sbjct: 63  LARQVFDEMTV-RDIPTWNSLIAGYSRSGDMEGALELFKLMPSRSVVSWTTMISGYSQNG 121

Query: 90  RYEDALEIYMRMEAEKGVKPNEVTIASV 7
            Y  ALE++++ME +K V+PNEVTIASV
Sbjct: 122 MYTKALEMFLKMEKDKEVRPNEVTIASV 149