BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00021078
         (1078 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003631455.1| PREDICTED: pentatricopeptide repeat-containi...   118   3e-24
emb|CBI25851.3| unnamed protein product [Vitis vinifera]              118   3e-24
gb|ACP39958.1| pentatricopeptide repeat protein [Gossypium hirsu...   112   1e-22
ref|XP_004139002.1| PREDICTED: pentatricopeptide repeat-containi...   109   1e-21
ref|XP_002531466.1| pentatricopeptide repeat-containing protein,...   106   9e-21

>ref|XP_003631455.1| PREDICTED: pentatricopeptide repeat-containing protein At5g47360-like
            [Vitis vinifera]
          Length = 638

 Score =  118 bits (295), Expect = 3e-24
 Identities = 58/111 (52%), Positives = 81/111 (72%)
 Frame = -2

Query: 1077 ANELFRWMLKNQIMPDGLASSILIKQLCLDGQILEGFEYYDEMEKIDCLPSIDSNIYSIL 898
            A +LFR ML N + PDGLA   LIK LCL+G++L+GF  +DE E ++ L  +DS+IYSIL
Sbjct: 356  AEKLFRRMLANAVKPDGLACGTLIKALCLEGRVLDGFHLFDEFENMEGLSYLDSDIYSIL 415

Query: 897  LVGLCQHGYSVEAVRLINAMVKRKIKVKASYTDSLIKSLQNSGEKELALHL 745
            LVGL Q  +SVEAV+L   MV R I++K  Y DS+++ L+ SG+KE+ ++L
Sbjct: 416  LVGLSQKRHSVEAVKLARLMVDRGIQLKTPYFDSIVEHLKESGDKEIVMYL 466


>emb|CBI25851.3| unnamed protein product [Vitis vinifera]
          Length = 528

 Score =  118 bits (295), Expect = 3e-24
 Identities = 58/117 (49%), Positives = 82/117 (70%)
 Frame = -2

Query: 1077 ANELFRWMLKNQIMPDGLASSILIKQLCLDGQILEGFEYYDEMEKIDCLPSIDSNIYSIL 898
            A +LFR ML N + PDGLA   LIK LCL+G++L+GF  +DE E ++ L  +DS+IYSIL
Sbjct: 362  AEKLFRRMLANAVKPDGLACGTLIKALCLEGRVLDGFHLFDEFENMEGLSYLDSDIYSIL 421

Query: 897  LVGLCQHGYSVEAVRLINAMVKRKIKVKASYTDSLIKSLQNSGEKELALHLKSAGIM 727
            LVGL Q  +SVEAV+L   MV R I++K  Y DS+++ L+ SG+KE+  H  +  ++
Sbjct: 422  LVGLSQKRHSVEAVKLARLMVDRGIQLKTPYFDSIVEHLKESGDKEICTHFCTLALL 478


>gb|ACP39958.1| pentatricopeptide repeat protein [Gossypium hirsutum]
            gi|227463014|gb|ACP39959.1| pentatricopeptide repeat
            protein [Gossypium hirsutum]
          Length = 288

 Score =  112 bits (281), Expect = 1e-22
 Identities = 53/111 (47%), Positives = 83/111 (74%)
 Frame = -2

Query: 1077 ANELFRWMLKNQIMPDGLASSILIKQLCLDGQILEGFEYYDEMEKIDCLPSIDSNIYSIL 898
            A +LFR ML +   P G+A S +I+++C +G++L+GF  Y+E+E++  + SID++IYSIL
Sbjct: 173  AEKLFRKMLVSGAKPSGIACSTMIREICHEGRVLDGFCLYNEIERMQYISSIDTDIYSIL 232

Query: 897  LVGLCQHGYSVEAVRLINAMVKRKIKVKASYTDSLIKSLQNSGEKELALHL 745
            LVGLC+  +SVEAV+L   M++R+I+++A Y D +IK L+NS +KEL   L
Sbjct: 233  LVGLCRQSHSVEAVKLARLMLRRRIRLEAPYVDEIIKHLKNSTDKELVTQL 283


>ref|XP_004139002.1| PREDICTED: pentatricopeptide repeat-containing protein At5g47360-like
            [Cucumis sativus] gi|449505643|ref|XP_004162530.1|
            PREDICTED: pentatricopeptide repeat-containing protein
            At5g47360-like [Cucumis sativus]
          Length = 475

 Score =  109 bits (272), Expect = 1e-21
 Identities = 51/111 (45%), Positives = 82/111 (73%)
 Frame = -2

Query: 1077 ANELFRWMLKNQIMPDGLASSILIKQLCLDGQILEGFEYYDEMEKIDCLPSIDSNIYSIL 898
            A +LFR ML N + PDG+A S++I++LCL+ ++L+GF    E+++   L SID++IYS+L
Sbjct: 360  AEKLFRNMLANGVKPDGVACSLMIRELCLEERVLDGFNLCYEVDRNGYLCSIDADIYSLL 419

Query: 897  LVGLCQHGYSVEAVRLINAMVKRKIKVKASYTDSLIKSLQNSGEKELALHL 745
            LVGLC+H +SV+A +L   M+K+ I++K  Y +S+IK L+   ++EL +HL
Sbjct: 420  LVGLCEHDHSVDAAKLARLMLKKGIRLKPHYAESIIKHLKKFEDRELVMHL 470


>ref|XP_002531466.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223528920|gb|EEF30916.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 518

 Score =  106 bits (265), Expect = 9e-21
 Identities = 49/115 (42%), Positives = 80/115 (69%)
 Frame = -2

Query: 1077 ANELFRWMLKNQIMPDGLASSILIKQLCLDGQILEGFEYYDEMEKIDCLPSIDSNIYSIL 898
            A +LFR  + + + PDGLA S++IK+LC   ++L+G+  +DE+EKI  L +IDS+ YS+L
Sbjct: 359  AEKLFRRAVVSGVKPDGLACSLMIKELCFVNRVLDGYCLHDEIEKIGSLSTIDSDTYSVL 418

Query: 897  LVGLCQHGYSVEAVRLINAMVKRKIKVKASYTDSLIKSLQNSGEKELALHLKSAG 733
            LVGLCQ GYS+EA +L  ++++++I +K  Y D +++ ++  G  +L   L S G
Sbjct: 419  LVGLCQQGYSLEAAKLARSLIEKRIHLKHPYVDKVVEYMKKFGVTDLVTELASIG 473