BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00021030
         (564 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABK94828.1| unknown [Populus trichocarpa]                           95   7e-18
ref|XP_002307583.1| predicted protein [Populus trichocarpa] gi|2...    94   1e-17
ref|XP_002271564.2| PREDICTED: ribosome biogenesis GTPase A-like...    94   2e-17
ref|XP_003566214.1| PREDICTED: LOW QUALITY PROTEIN: ribosome bio...    90   3e-16
ref|NP_192188.2| GTP-binding protein [Arabidopsis thaliana] gi|2...    90   3e-16

>gb|ABK94828.1| unknown [Populus trichocarpa]
          Length = 367

 Score = 95.1 bits (235), Expect = 7e-18
 Identities = 40/60 (66%), Positives = 50/60 (83%)
 Frame = -2

Query: 563 GSKALYNRYKIHVEDHCGKTFLEKLSMELFNGDVHQAAFRVLADFRKGRFGWVGLETPPK 384
           G+KAL NRYK+  +D CGK F++KLS+ LFNGD HQAAFR+L+DFRKG+FGW  LE PP+
Sbjct: 308 GAKALNNRYKMDADDFCGKIFVQKLSVHLFNGDTHQAAFRILSDFRKGKFGWAALERPPR 367


>ref|XP_002307583.1| predicted protein [Populus trichocarpa] gi|222857032|gb|EEE94579.1|
           predicted protein [Populus trichocarpa]
          Length = 387

 Score = 94.4 bits (233), Expect = 1e-17
 Identities = 40/59 (67%), Positives = 49/59 (83%)
 Frame = -2

Query: 563 GSKALYNRYKIHVEDHCGKTFLEKLSMELFNGDVHQAAFRVLADFRKGRFGWVGLETPP 387
           G+KAL NRYK+  +D CGK F++KLS+ LFNGD HQAAFR+L+DFRKG+FGW  LE PP
Sbjct: 308 GAKALNNRYKMDADDFCGKIFVQKLSVHLFNGDTHQAAFRILSDFRKGKFGWAALERPP 366


>ref|XP_002271564.2| PREDICTED: ribosome biogenesis GTPase A-like [Vitis vinifera]
           gi|296086696|emb|CBI32331.3| unnamed protein product
           [Vitis vinifera]
          Length = 367

 Score = 93.6 bits (231), Expect = 2e-17
 Identities = 39/59 (66%), Positives = 48/59 (81%)
 Frame = -2

Query: 563 GSKALYNRYKIHVEDHCGKTFLEKLSMELFNGDVHQAAFRVLADFRKGRFGWVGLETPP 387
           G KALYNRYKI  +  CG  F++KL+++LFNGD HQAAFR+L DFRKG+FGW+ LE PP
Sbjct: 308 GPKALYNRYKIDTDGLCGNIFVQKLALQLFNGDTHQAAFRILTDFRKGKFGWIALERPP 366


>ref|XP_003566214.1| PREDICTED: LOW QUALITY PROTEIN: ribosome biogenesis GTPase A-like
           [Brachypodium distachyon]
          Length = 376

 Score = 89.7 bits (221), Expect = 3e-16
 Identities = 40/59 (67%), Positives = 47/59 (79%)
 Frame = -2

Query: 563 GSKALYNRYKIHVEDHCGKTFLEKLSMELFNGDVHQAAFRVLADFRKGRFGWVGLETPP 387
           GS+A   RYKI+V+  CGK F+ KLS+ LFNGD  QAAFR+L+DFRKGRFGWV LE PP
Sbjct: 317 GSEAFRKRYKINVDSDCGKMFVTKLSLHLFNGDTSQAAFRILSDFRKGRFGWVALERPP 375


>ref|NP_192188.2| GTP-binding protein [Arabidopsis thaliana]
           gi|23297397|gb|AAN12960.1| unknown protein [Arabidopsis
           thaliana] gi|332656830|gb|AEE82230.1| GTP-binding
           protein [Arabidopsis thaliana]
          Length = 372

 Score = 89.7 bits (221), Expect = 3e-16
 Identities = 39/59 (66%), Positives = 48/59 (81%)
 Frame = -2

Query: 563 GSKALYNRYKIHVEDHCGKTFLEKLSMELFNGDVHQAAFRVLADFRKGRFGWVGLETPP 387
           G+KALYNRYKI +E +CGK F++ L + LF GD HQAAFR+L DFRKG+FG+V LE PP
Sbjct: 313 GAKALYNRYKIQLEGNCGKKFVKTLGLNLFGGDSHQAAFRILTDFRKGKFGYVSLERPP 371