BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00021015
         (460 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002510334.1| pentatricopeptide repeat-containing protein,...   102   1e-25
emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]    92   1e-19
ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat...    92   1e-19
ref|NP_173362.2| pentatricopeptide repeat-containing protein [Ar...    95   5e-18
ref|XP_002890327.1| pentatricopeptide repeat-containing protein ...    94   1e-17

>ref|XP_002510334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223551035|gb|EEF52521.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 947

 Score =  102 bits (255), Expect(2) = 1e-25
 Identities = 49/79 (62%), Positives = 62/79 (78%)
 Frame = -3

Query: 239 LVLERYHAINELYLDYSDDIIEGALQKLKFNPIACLPIFQLALKQQNFRPNVLAYCKMVH 60
           LVL RYHA+ +L   +SD I++  L KLKFNPIA L  F+LA KQ NFRPNV ++CK+VH
Sbjct: 43  LVLGRYHALKDLNFQFSDYILDSVLLKLKFNPIASLHFFKLASKQSNFRPNVNSHCKLVH 102

Query: 59  ILAKARMFDEAKWYLNELV 3
           IL++ARM+DE + YLNELV
Sbjct: 103 ILSRARMYDETRSYLNELV 121



 Score = 38.5 bits (88), Expect(2) = 1e-25
 Identities = 22/52 (42%), Positives = 30/52 (57%)
 Frame = -2

Query: 393 MIRYIPISRYNFHSINQKHSFHTTPTLHLQWKQRHEYKLQKPELINRICRIL 238
           M+RY PI   +   +  + S+H        WK RHE KL +PELI+RI R+L
Sbjct: 1   MLRYSPIFP-SLSLLRLRKSYH--------WKPRHESKLTRPELIDRISRLL 43


>emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
          Length = 1037

 Score = 92.4 bits (228), Expect(2) = 1e-19
 Identities = 42/79 (53%), Positives = 59/79 (74%)
 Frame = -3

Query: 239 LVLERYHAINELYLDYSDDIIEGALQKLKFNPIACLPIFQLALKQQNFRPNVLAYCKMVH 60
           ++L R +AI++L   +SDDI++  L+ L+ NP A L  FQ   KQQNFRPNV +YCK+VH
Sbjct: 51  VLLRRCNAISKLNFVFSDDIVDAVLRNLRLNPTASLGFFQFVSKQQNFRPNVKSYCKLVH 110

Query: 59  ILAKARMFDEAKWYLNELV 3
           IL++ RM+DE + YLN+LV
Sbjct: 111 ILSRGRMYDETRAYLNQLV 129



 Score = 28.9 bits (63), Expect(2) = 1e-19
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 309 LQWKQRHEYKLQKPELINRICRIL 238
           L WK R E     PEL++RICR++
Sbjct: 28  LLWKLRDESHPAPPELVSRICRLV 51


>ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Vitis vinifera]
          Length = 939

 Score = 92.4 bits (228), Expect(2) = 1e-19
 Identities = 42/79 (53%), Positives = 59/79 (74%)
 Frame = -3

Query: 239 LVLERYHAINELYLDYSDDIIEGALQKLKFNPIACLPIFQLALKQQNFRPNVLAYCKMVH 60
           ++L R +AI++L   +SDDI++  L+ L+ NP A L  FQ   KQQNFRPNV +YCK+VH
Sbjct: 51  VLLRRCNAISKLNFVFSDDIVDAVLRNLRLNPTASLGFFQFVSKQQNFRPNVKSYCKLVH 110

Query: 59  ILAKARMFDEAKWYLNELV 3
           IL++ RM+DE + YLN+LV
Sbjct: 111 ILSRGRMYDETRAYLNQLV 129



 Score = 28.9 bits (63), Expect(2) = 1e-19
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 309 LQWKQRHEYKLQKPELINRICRIL 238
           L WK R E     PEL++RICR++
Sbjct: 28  LLWKLRDESHPAPPELVSRICRLV 51


>ref|NP_173362.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|193806505|sp|Q9LN69.2|PPR50_ARATH RecName:
           Full=Putative pentatricopeptide repeat-containing
           protein At1g19290 gi|332191705|gb|AEE29826.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 904

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 45/79 (56%), Positives = 60/79 (75%)
 Frame = -3

Query: 239 LVLERYHAINELYLDYSDDIIEGALQKLKFNPIACLPIFQLALKQQNFRPNVLAYCKMVH 60
           LVL RY A+++L LD+SD+++   L++L+ NP ACL IF LA KQQ FRP+  AYCKMVH
Sbjct: 53  LVLGRYEALHDLSLDFSDELLNSILRRLRLNPEACLEIFNLASKQQKFRPDYKAYCKMVH 112

Query: 59  ILAKARMFDEAKWYLNELV 3
           IL++AR + + K YL ELV
Sbjct: 113 ILSRARNYQQTKSYLCELV 131


>ref|XP_002890327.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297336169|gb|EFH66586.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 903

 Score = 93.6 bits (231), Expect = 1e-17
 Identities = 44/79 (55%), Positives = 60/79 (75%)
 Frame = -3

Query: 239 LVLERYHAINELYLDYSDDIIEGALQKLKFNPIACLPIFQLALKQQNFRPNVLAYCKMVH 60
           LVL RY A+++L LD+SD+++   L++L+ NP AC+ IF LA KQQ FRP+  AYCKMVH
Sbjct: 53  LVLGRYEALHDLSLDFSDELLNSILRRLRLNPEACVEIFNLASKQQKFRPDYKAYCKMVH 112

Query: 59  ILAKARMFDEAKWYLNELV 3
           IL++AR + + K YL ELV
Sbjct: 113 ILSRARNYGQTKSYLCELV 131