BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00021003
         (334 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002523895.1| pentatricopeptide repeat-containing protein,...    35   9e-07
ref|XP_002533225.1| pentatricopeptide repeat-containing protein,...    35   3e-06
ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat...    37   4e-06
ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containi...    37   7e-06

>ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223536825|gb|EEF38464.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 784

 Score = 35.4 bits (80), Expect(3) = 9e-07
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +3

Query: 45  YCKRGMLDDAQSLLMDIEEKGIAPDDNTLNIIVQGY 152
           Y K G +D+A + L  +EE G +PD  T N ++ GY
Sbjct: 397 YVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGY 432



 Score = 34.7 bits (78), Expect(3) = 9e-07
 Identities = 19/58 (32%), Positives = 34/58 (58%)
 Frame = +1

Query: 151 IHKAVQFLDEMAKKGISVNAETTSVILDLLLADRPNDESIDIRRNFLLSDE*RRYFFV 324
           + +A + +DEM++KG+ +N+ T + IL  L  +R  D++       LLS   +R +FV
Sbjct: 438 LSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYK-----LLSSASKRGYFV 490



 Score = 26.6 bits (57), Expect(3) = 9e-07
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 2   LSSKEVQPNTVTYNVL*ERYVR 67
           +  K V+PN VTYNV+ + YV+
Sbjct: 378 MEGKGVKPNAVTYNVVVKWYVK 399


>ref|XP_002533225.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223526957|gb|EEF29157.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 605

 Score = 34.7 bits (78), Expect(3) = 3e-06
 Identities = 19/58 (32%), Positives = 34/58 (58%)
 Frame = +1

Query: 151 IHKAVQFLDEMAKKGISVNAETTSVILDLLLADRPNDESIDIRRNFLLSDE*RRYFFV 324
           + +A + +DEM++KG+ +N+ T + IL  L  +R  D++       LLS   +R +FV
Sbjct: 274 LSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYK-----LLSSASKRGYFV 326



 Score = 33.5 bits (75), Expect(3) = 3e-06
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 45  YCKRGMLDDAQSLLMDIEEKGIAPDDNTLNIIVQGY 152
           Y K G +D+A + L  +EE G +PD  T N +  GY
Sbjct: 233 YVKEGKMDNAGNELRKMEESGFSPDCVTFNTLSNGY 268



 Score = 26.6 bits (57), Expect(3) = 3e-06
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 2   LSSKEVQPNTVTYNVL*ERYVR 67
           +  K V+PN VTYNV+ + YV+
Sbjct: 214 MEGKGVKPNAVTYNVVVKWYVK 235


>ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 744

 Score = 37.0 bits (84), Expect(3) = 4e-06
 Identities = 19/57 (33%), Positives = 36/57 (63%)
 Frame = +1

Query: 157 KAVQFLDEMAKKGISVNAETTSVILDLLLADRPNDESIDIRRNFLLSDE*RRYFFVL 327
           +A+Q L+EM  +G S +  TT+++++ +L+D   D+S       +LS++ RRYF  +
Sbjct: 529 RAIQLLEEMLARGFSADVSTTTLLVE-MLSDDGLDQSSCFLMLSVLSEDDRRYFIFI 584



 Score = 35.8 bits (81), Expect(3) = 4e-06
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +3

Query: 48  CKRGMLDDAQSLLMDIEEKGIAPDDNTLNIIVQGY 152
           CKRG+L++A  L M+++    +PD  T N I +G+
Sbjct: 487 CKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGF 521



 Score = 21.6 bits (44), Expect(3) = 4e-06
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 2   LSSKEVQPNTVTYNVL 49
           LSSK + P+  TYN++
Sbjct: 467 LSSKGLHPSVWTYNIM 482


>ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
           gi|297735515|emb|CBI17955.3| unnamed protein product
           [Vitis vinifera]
          Length = 627

 Score = 37.4 bits (85), Expect(3) = 7e-06
 Identities = 15/35 (42%), Positives = 25/35 (71%)
 Frame = +3

Query: 48  CKRGMLDDAQSLLMDIEEKGIAPDDNTLNIIVQGY 152
           CK G L++A+ L + +EEKG AP+  T N +++G+
Sbjct: 529 CKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGF 563



 Score = 35.0 bits (79), Expect(3) = 7e-06
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = +1

Query: 148 DIHKAVQFLDEMAKKGISVNAETTSVILDLLLADRPNDESIDIRRNF 288
           ++ K V+ L EMA+K  S +A T S+++DLL  D    E + +   F
Sbjct: 568 EMQKVVELLQEMAEKDFSPDASTISIVVDLLSKDEKYREYLHLLPTF 614



 Score = 21.2 bits (43), Expect(3) = 7e-06
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 2   LSSKEVQPNTVTYNVL 49
           LS + ++PN +TY V+
Sbjct: 509 LSHEGLEPNVITYTVM 524