BLASTX nr result
ID: Coptis23_contig00020455
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00020455
(1385 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002276330.1| PREDICTED: uncharacterized protein LOC100268... 104 3e-34
emb|CBI21495.3| unnamed protein product [Vitis vinifera] 104 3e-34
ref|XP_002532942.1| conserved hypothetical protein [Ricinus comm... 84 5e-31
gb|AAM62516.1| unknown [Arabidopsis thaliana] 62 5e-18
ref|NP_201300.1| Mitochondrial transcription termination factor ... 62 5e-18
>ref|XP_002276330.1| PREDICTED: uncharacterized protein LOC100268158 [Vitis vinifera]
Length = 388
Score = 104 bits (259), Expect(2) = 3e-34
Identities = 51/98 (52%), Positives = 71/98 (72%)
Frame = +2
Query: 845 LANYLIKNFNFSEPRALSASKRFWWAKNPDNIETVVTLLKQHGFSDAHIENTVKTTPQIL 1024
+ NYLI+ F FS+ A S S RFWWAK+ +N ++V+ L+ GFS+AHI +V+ PQIL
Sbjct: 48 IVNYLIQTFGFSQTLANSISNRFWWAKSTENPQSVIHFLRDLGFSEAHIRTSVRVGPQIL 107
Query: 1025 FAKINKTLIPKLKFFQENLGLRDSDLGLFLSKNATLFT 1138
F+ I+KTL PK++FF E LGL +DLG F+SKN+ + T
Sbjct: 108 FSDIDKTLKPKVQFF-EQLGLVGADLGKFISKNSKVLT 144
Score = 68.9 bits (167), Expect(2) = 3e-34
Identities = 41/83 (49%), Positives = 54/83 (65%), Gaps = 2/83 (2%)
Frame = +3
Query: 1140 SLERKLIPNTEILLKILSGDRKA--LIWTIGKCKWILCKYPKSSLLVNIGLLEKYGIVGS 1313
SLE+KL+P EIL K LS D LI + +C W+L + P+ LL NI LE GIVGS
Sbjct: 146 SLEKKLVPCIEILKKTLSDDENNGDLIRVLRRCTWVLSRNPEL-LLSNIAFLESCGIVGS 204
Query: 1314 QLSMIVKSRPILLVLEESKLCDL 1382
QLSM++ +P L V+++S L DL
Sbjct: 205 QLSMLLTRQPRLFVIKQSTLKDL 227
>emb|CBI21495.3| unnamed protein product [Vitis vinifera]
Length = 369
Score = 104 bits (259), Expect(2) = 3e-34
Identities = 51/98 (52%), Positives = 71/98 (72%)
Frame = +2
Query: 845 LANYLIKNFNFSEPRALSASKRFWWAKNPDNIETVVTLLKQHGFSDAHIENTVKTTPQIL 1024
+ NYLI+ F FS+ A S S RFWWAK+ +N ++V+ L+ GFS+AHI +V+ PQIL
Sbjct: 29 IVNYLIQTFGFSQTLANSISNRFWWAKSTENPQSVIHFLRDLGFSEAHIRTSVRVGPQIL 88
Query: 1025 FAKINKTLIPKLKFFQENLGLRDSDLGLFLSKNATLFT 1138
F+ I+KTL PK++FF E LGL +DLG F+SKN+ + T
Sbjct: 89 FSDIDKTLKPKVQFF-EQLGLVGADLGKFISKNSKVLT 125
Score = 68.9 bits (167), Expect(2) = 3e-34
Identities = 41/83 (49%), Positives = 54/83 (65%), Gaps = 2/83 (2%)
Frame = +3
Query: 1140 SLERKLIPNTEILLKILSGDRKA--LIWTIGKCKWILCKYPKSSLLVNIGLLEKYGIVGS 1313
SLE+KL+P EIL K LS D LI + +C W+L + P+ LL NI LE GIVGS
Sbjct: 127 SLEKKLVPCIEILKKTLSDDENNGDLIRVLRRCTWVLSRNPEL-LLSNIAFLESCGIVGS 185
Query: 1314 QLSMIVKSRPILLVLEESKLCDL 1382
QLSM++ +P L V+++S L DL
Sbjct: 186 QLSMLLTRQPRLFVIKQSTLKDL 208
>ref|XP_002532942.1| conserved hypothetical protein [Ricinus communis]
gi|223527293|gb|EEF29446.1| conserved hypothetical
protein [Ricinus communis]
Length = 366
Score = 84.3 bits (207), Expect(2) = 5e-31
Identities = 45/98 (45%), Positives = 65/98 (66%)
Frame = +2
Query: 845 LANYLIKNFNFSEPRALSASKRFWWAKNPDNIETVVTLLKQHGFSDAHIENTVKTTPQIL 1024
L +YL+K+ FSE +A + S RF K+ + ++V LK G S++HI++ + PQIL
Sbjct: 22 LFHYLLKSLKFSETQAFTISNRFSHIKSTEKPQSVHYFLKNLGLSNSHIQSAIHGAPQIL 81
Query: 1025 FAKINKTLIPKLKFFQENLGLRDSDLGLFLSKNATLFT 1138
FA ++K L PK+K FQ+ LGL DLG F+SKN+TL T
Sbjct: 82 FANVDKCLKPKVKLFQD-LGLVGYDLGKFISKNSTLLT 118
Score = 78.2 bits (191), Expect(2) = 5e-31
Identities = 40/83 (48%), Positives = 56/83 (67%), Gaps = 2/83 (2%)
Frame = +3
Query: 1140 SLERKLIPNTEILLKILSGDR--KALIWTIGKCKWILCKYPKSSLLVNIGLLEKYGIVGS 1313
SL++KL P EIL ++L D K L+ + +C WI+ K PKS LL N+ LE GIVGS
Sbjct: 120 SLDKKLSPRVEILKRLLLNDENNKDLVKVLTRCNWIISKNPKSRLLSNVAFLESCGIVGS 179
Query: 1314 QLSMIVKSRPILLVLEESKLCDL 1382
QLSM+++ +P L +++ES L DL
Sbjct: 180 QLSMLLRRQPRLFIMQESALRDL 202
>gb|AAM62516.1| unknown [Arabidopsis thaliana]
Length = 391
Score = 62.0 bits (149), Expect(2) = 5e-18
Identities = 28/91 (30%), Positives = 59/91 (64%)
Frame = +2
Query: 860 IKNFNFSEPRALSASKRFWWAKNPDNIETVVTLLKQHGFSDAHIENTVKTTPQILFAKIN 1039
+++ F +P A++ + R+ K+ + +V+ +LK + FSD I+ +++ P+++F +
Sbjct: 45 LRDNGFQKPLAIAIAMRYPNLKSLEQPRSVIQMLKSYSFSDTQIQKSIRVHPRMMFYNVE 104
Query: 1040 KTLIPKLKFFQENLGLRDSDLGLFLSKNATL 1132
K L PKL+FF++ +G S LG F+S+N+++
Sbjct: 105 KILEPKLRFFKD-IGFTGSGLGKFVSQNSSV 134
Score = 56.6 bits (135), Expect(2) = 5e-18
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Frame = +3
Query: 1140 SLERKLIPNTEILLKILSGDRKALIWTIGKCKWILC-KYPKSSLLVNIGLLEKYGIVGSQ 1316
SL +KLIP EIL I++ + L + +C W+L + P LL NI LE GIVGSQ
Sbjct: 138 SLVKKLIPTVEILKSIVAPKHEDLPVILSRCGWLLLSRDPNLFLLPNISYLETCGIVGSQ 197
Query: 1317 LSMIVKSRPILLVLEESKL 1373
L+ +++ +P + L E KL
Sbjct: 198 LASLLRRQPRIFNLSEEKL 216
>ref|NP_201300.1| Mitochondrial transcription termination factor family protein
[Arabidopsis thaliana] gi|8843759|dbj|BAA97307.1| unnamed
protein product [Arabidopsis thaliana]
gi|332010591|gb|AED97974.1| Mitochondrial transcription
termination factor family protein [Arabidopsis thaliana]
Length = 391
Score = 62.0 bits (149), Expect(2) = 5e-18
Identities = 28/91 (30%), Positives = 59/91 (64%)
Frame = +2
Query: 860 IKNFNFSEPRALSASKRFWWAKNPDNIETVVTLLKQHGFSDAHIENTVKTTPQILFAKIN 1039
+++ F +P A++ + R+ K+ + +V+ +LK + FSD I+ +++ P+++F +
Sbjct: 45 LRDNGFQKPLAIAIAMRYPNLKSLEQPRSVIQMLKSYSFSDTQIQKSIRVHPRMMFYNVE 104
Query: 1040 KTLIPKLKFFQENLGLRDSDLGLFLSKNATL 1132
K L PKL+FF++ +G S LG F+S+N+++
Sbjct: 105 KILEPKLRFFKD-IGFTGSGLGKFVSQNSSV 134
Score = 56.6 bits (135), Expect(2) = 5e-18
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Frame = +3
Query: 1140 SLERKLIPNTEILLKILSGDRKALIWTIGKCKWILC-KYPKSSLLVNIGLLEKYGIVGSQ 1316
SL +KLIP EIL I++ + L + +C W+L + P LL NI LE GIVGSQ
Sbjct: 138 SLVKKLIPTVEILKSIVAPKHEDLPVILSRCGWLLLSRDPNLFLLPNISYLETCGIVGSQ 197
Query: 1317 LSMIVKSRPILLVLEESKL 1373
L+ +++ +P + L E KL
Sbjct: 198 LASLLRRQPRIFNLSEEKL 216