BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00020454
         (457 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAL25185.1|AC079852_18 Putative polyprotein [Oryza sativa] gi...    65   7e-09
gb|ABB46561.1| retrotransposon protein, putative, Ty1-copia subc...    64   1e-08
gb|AAM08642.1|AC108883_15 Putative copia-type pol polyprotein [O...    64   1e-08
gb|AAO66559.1| putative copia-type pol polyprotein [Oryza sativa...    64   2e-08
gb|ABF97065.1| retrotransposon protein, putative, Ty1-copia subc...    63   2e-08

>gb|AAL25185.1|AC079852_18 Putative polyprotein [Oryza sativa] gi|31430131|gb|AAP52089.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1407

 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 33/80 (41%), Positives = 49/80 (61%)
 Frame = +2

Query: 215  TPVGVAAPLVSFDHASTRVQQHHSVGDVLGDLKADLQTRSKIKNAVHYVCYVSLIEPKNV 394
            +P+ +A P +   H S  +Q+ H   ++LGD+   + TRS+I N   +  +VS IEP  V
Sbjct: 1193 SPINLAHPRI---HQS--IQRDHPTDNILGDINKGVSTRSRITNFCEHYSFVSSIEPLKV 1247

Query: 395  TEALDAKDWILAMQEELGQF 454
             EAL+  DW++AMQEEL  F
Sbjct: 1248 EEALNDPDWVMAMQEELNNF 1267


>gb|ABB46561.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1991

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 32/80 (40%), Positives = 49/80 (61%)
 Frame = +2

Query: 215  TPVGVAAPLVSFDHASTRVQQHHSVGDVLGDLKADLQTRSKIKNAVHYVCYVSLIEPKNV 394
            +P+ +A P +   H S  +Q+ H   ++LGD+   + TRS+I N   +  +VS +EP  V
Sbjct: 993  SPINLARPRI---HQS--IQRDHPTDNILGDINKGVSTRSRIANFCEHYSFVSSLEPLRV 1047

Query: 395  TEALDAKDWILAMQEELGQF 454
             EAL+  DW++AMQEEL  F
Sbjct: 1048 EEALNDPDWVMAMQEELNNF 1067


>gb|AAM08642.1|AC108883_15 Putative copia-type pol polyprotein [Oryza sativa Japonica Group]
          Length = 1866

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 32/80 (40%), Positives = 49/80 (61%)
 Frame = +2

Query: 215  TPVGVAAPLVSFDHASTRVQQHHSVGDVLGDLKADLQTRSKIKNAVHYVCYVSLIEPKNV 394
            +P+ +A P +   H S  +Q+ H   ++LGD+   + TRS+I N   +  +VS +EP  V
Sbjct: 868  SPINLARPRI---HQS--IQRDHPTDNILGDINKGVSTRSRIANFCEHYSFVSSLEPLRV 922

Query: 395  TEALDAKDWILAMQEELGQF 454
             EAL+  DW++AMQEEL  F
Sbjct: 923  EEALNDPDWVMAMQEELNNF 942


>gb|AAO66559.1| putative copia-type pol polyprotein [Oryza sativa Japonica Group]
            gi|108709148|gb|ABF96943.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 2027

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 31/80 (38%), Positives = 49/80 (61%)
 Frame = +2

Query: 215  TPVGVAAPLVSFDHASTRVQQHHSVGDVLGDLKADLQTRSKIKNAVHYVCYVSLIEPKNV 394
            +P+ +A P +   H S  +Q+ H   ++LGD+   + TRS+I N   +  +VS +EP  V
Sbjct: 1180 SPINLARPRI---HQS--IQRDHPTDNILGDINKGVSTRSRIANFCEHYSFVSSLEPLRV 1234

Query: 395  TEALDAKDWILAMQEELGQF 454
             EA++  DW++AMQEEL  F
Sbjct: 1235 EEAINDPDWVMAMQEELNNF 1254


>gb|ABF97065.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1907

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 32/79 (40%), Positives = 47/79 (59%)
 Frame = +2

Query: 218  PVGVAAPLVSFDHASTRVQQHHSVGDVLGDLKADLQTRSKIKNAVHYVCYVSLIEPKNVT 397
            P+ +A P +   H S  +Q+ H    +LGD+   + TRS+I N   +  +VS +EP  V 
Sbjct: 1097 PINLAHPRI---HQS--IQRDHPTNSILGDINKGVSTRSRIVNFCEHYSFVSSLEPLRVK 1151

Query: 398  EALDAKDWILAMQEELGQF 454
            EAL+  DW++AMQEEL  F
Sbjct: 1152 EALNDPDWVMAMQEELNNF 1170