BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00020450
         (1084 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002865017.1| nitrogen regulation family protein [Arabidop...   473   e-131
ref|XP_002283225.1| PREDICTED: tRNA-dihydrouridine synthase 1-li...   471   e-130
ref|NP_201523.1| tRNA-dihydrouridine synthase 4 [Arabidopsis tha...   470   e-130
ref|XP_004151862.1| PREDICTED: tRNA-dihydrouridine(16/17) syntha...   469   e-130
ref|XP_002533266.1| tRNA-dihydrouridine synthase, putative [Rici...   465   e-129

>ref|XP_002865017.1| nitrogen regulation family protein [Arabidopsis lyrata subsp. lyrata]
            gi|297310852|gb|EFH41276.1| nitrogen regulation family
            protein [Arabidopsis lyrata subsp. lyrata]
          Length = 423

 Score =  473 bits (1217), Expect = e-131
 Identities = 238/339 (70%), Positives = 274/339 (80%), Gaps = 10/339 (2%)
 Frame = +1

Query: 97   KLPSLNFLFTLFPKSFMTTTKI------PPPTSEHQDDECICSDTNDLSL---LEQPLSS 249
            KL   N  F L  KSF++ T+       P P      D+ +CS+  D  +   ++   +S
Sbjct: 2    KLNLSNLRFLLTRKSFISQTRAMTQNPDPKPDPSKVIDDLLCSEQRDGQIEETVDAVAAS 61

Query: 250  KNSPSCTLSKDLRIERAWAHWKKLGQPKFIVAPMVDNSELPFRMLCRKYGAQAAYTPMLH 429
              SPS  LS D R+ERAWAHWKKLG+PK+IVAPMVDNSELPFR+LC+KYGAQAAYTPMLH
Sbjct: 62   LGSPSRVLSIDTRVERAWAHWKKLGRPKYIVAPMVDNSELPFRLLCQKYGAQAAYTPMLH 121

Query: 430  SRLFLENEKQRNMEFTTCKEDRPLFVQFCANDPDILLEAAKLVEQHCDYVDINLGCPQRI 609
            SR+F E EK RN EFTTCKEDRPLFVQFCANDPD LLEAAK VE +CDYVDINLGCPQRI
Sbjct: 122  SRIFTETEKYRNQEFTTCKEDRPLFVQFCANDPDTLLEAAKRVEPYCDYVDINLGCPQRI 181

Query: 610  ARRGNYGAFLMDNLPVVRSLVQSLADNLHVPVSCKIRIFPDMQDTIKYARMLEDAGCFLL 789
            ARRGNYGAFLMDNLP+V+SLV+ LA NL+VPVSCKIRIFP++QDT+KYA+MLEDAGC LL
Sbjct: 182  ARRGNYGAFLMDNLPLVKSLVEKLAQNLNVPVSCKIRIFPNLQDTLKYAKMLEDAGCSLL 241

Query: 790  AVHGRTRDEKDGKKFRADWNAIKDVKAALRIPVLANGNIRHMDDVLSCLEETGVDGVLSA 969
            AVHGRTRDEKDGKK RADW+AIK+VK ALRIPVL NGN+R ++DV +C++ETGV+GVLSA
Sbjct: 242  AVHGRTRDEKDGKKLRADWSAIKEVKNALRIPVLGNGNVRCIEDVDNCIKETGVEGVLSA 301

Query: 970  EPLLENPALFAGFRTAEWV-DKEEEGIEGDLLDQADLLV 1083
            E LLENPA FAGFRTAEWV + EEEG     LDQ DL+V
Sbjct: 302  ETLLENPAAFAGFRTAEWVSENEEEGFVDGGLDQGDLVV 340


>ref|XP_002283225.1| PREDICTED: tRNA-dihydrouridine synthase 1-like [Vitis vinifera]
          Length = 424

 Score =  471 bits (1213), Expect = e-130
 Identities = 240/318 (75%), Positives = 262/318 (82%), Gaps = 3/318 (0%)
 Frame = +1

Query: 139  SFMTTTKIPPPTSEHQD---DECICSDTNDLSLLEQPLSSKNSPSCTLSKDLRIERAWAH 309
            S   T  +  P    QD   D+ ICS+  +    E   SS + PS  L+ + RIERAWAH
Sbjct: 28   SISETLTLTLPAGSPQDSNLDDHICSEQQEHQ--ECQSSSADWPSRCLTGESRIERAWAH 85

Query: 310  WKKLGQPKFIVAPMVDNSELPFRMLCRKYGAQAAYTPMLHSRLFLENEKQRNMEFTTCKE 489
            WKKLGQPK IVAPMVDNSELPFRMLCRKYGAQAAYTPMLHSR+F ENEK R+ EFTTCKE
Sbjct: 86   WKKLGQPKLIVAPMVDNSELPFRMLCRKYGAQAAYTPMLHSRIFSENEKYRSQEFTTCKE 145

Query: 490  DRPLFVQFCANDPDILLEAAKLVEQHCDYVDINLGCPQRIARRGNYGAFLMDNLPVVRSL 669
            DRPLFVQFCANDPD LLEAA+ VE +CDYVDINLGCPQRIARRGNYGAFLMDNLP+V+SL
Sbjct: 146  DRPLFVQFCANDPDTLLEAAQRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSL 205

Query: 670  VQSLADNLHVPVSCKIRIFPDMQDTIKYARMLEDAGCFLLAVHGRTRDEKDGKKFRADWN 849
            V+ LA NLHVPVSCKIR+FP++QDTI YARMLEDAGC LLAVHGRTRDEKDGKKFRADWN
Sbjct: 206  VEKLALNLHVPVSCKIRVFPNLQDTINYARMLEDAGCSLLAVHGRTRDEKDGKKFRADWN 265

Query: 850  AIKDVKAALRIPVLANGNIRHMDDVLSCLEETGVDGVLSAEPLLENPALFAGFRTAEWVD 1029
            AIK VK A+ IPVLANG+IRHMDDV  CLEETG DGVLSAE LLENPALFAGF+TAEW  
Sbjct: 266  AIKAVKNAVSIPVLANGDIRHMDDVQRCLEETGADGVLSAESLLENPALFAGFQTAEWAL 325

Query: 1030 KEEEGIEGDLLDQADLLV 1083
              EEG +   LDQA+LLV
Sbjct: 326  GGEEGNKDGELDQANLLV 343


>ref|NP_201523.1| tRNA-dihydrouridine synthase 4 [Arabidopsis thaliana]
            gi|10177609|dbj|BAB10956.1| unnamed protein product
            [Arabidopsis thaliana] gi|15146316|gb|AAK83641.1|
            AT5g67220/K21H1_18 [Arabidopsis thaliana]
            gi|20908082|gb|AAM26724.1| AT5g67220/K21H1_18
            [Arabidopsis thaliana] gi|332010932|gb|AED98315.1|
            tRNA-dihydrouridine synthase 4 [Arabidopsis thaliana]
          Length = 423

 Score =  470 bits (1209), Expect = e-130
 Identities = 231/317 (72%), Positives = 265/317 (83%), Gaps = 4/317 (1%)
 Frame = +1

Query: 145  MTTTKIPPPTSEHQDDECICSDTNDLSL---LEQPLSSKNSPSCTLSKDLRIERAWAHWK 315
            MT    P P      D+ +CS+  D  +   ++   +S  SPS  LS D R+ERAWAHWK
Sbjct: 24   MTQNPDPKPDPSQVLDDILCSEQRDGQIEETVDTAPASLGSPSRVLSIDTRVERAWAHWK 83

Query: 316  KLGQPKFIVAPMVDNSELPFRMLCRKYGAQAAYTPMLHSRLFLENEKQRNMEFTTCKEDR 495
            KLG+PK+IVAPMVDNSELPFR+LC+KYGAQAAYTPMLHSR+F E EK RN EFTTCKEDR
Sbjct: 84   KLGRPKYIVAPMVDNSELPFRLLCQKYGAQAAYTPMLHSRIFTETEKYRNQEFTTCKEDR 143

Query: 496  PLFVQFCANDPDILLEAAKLVEQHCDYVDINLGCPQRIARRGNYGAFLMDNLPVVRSLVQ 675
            PLFVQFCANDPD LLEAAK VE +CDYVDINLGCPQRIARRGNYGAFLMDNLP+V+SLV+
Sbjct: 144  PLFVQFCANDPDTLLEAAKRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVE 203

Query: 676  SLADNLHVPVSCKIRIFPDMQDTIKYARMLEDAGCFLLAVHGRTRDEKDGKKFRADWNAI 855
             LA NL+VPVSCKIRIFP+++DT+KYA+MLEDAGC LLAVHGRTRDEKDGKKFRADW+AI
Sbjct: 204  KLAQNLNVPVSCKIRIFPNLEDTLKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWSAI 263

Query: 856  KDVKAALRIPVLANGNIRHMDDVLSCLEETGVDGVLSAEPLLENPALFAGFRTAEWV-DK 1032
            K+VK A+RIPVLANGN+R ++DV +C++ETGV+GVLSAE LLENPA FAGFRTAEW  D 
Sbjct: 264  KEVKNAMRIPVLANGNVRCIEDVDNCIKETGVEGVLSAETLLENPAAFAGFRTAEWAKDN 323

Query: 1033 EEEGIEGDLLDQADLLV 1083
            EEEG     LDQ DL+V
Sbjct: 324  EEEGFVDGGLDQGDLVV 340


>ref|XP_004151862.1| PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
            [Cucumis sativus] gi|449484028|ref|XP_004156763.1|
            PREDICTED: tRNA-dihydrouridine(16/17) synthase
            [NAD(P)(+)]-like [Cucumis sativus]
          Length = 426

 Score =  469 bits (1206), Expect = e-130
 Identities = 237/340 (69%), Positives = 272/340 (80%), Gaps = 15/340 (4%)
 Frame = +1

Query: 109  LNFLFTLFPKSFMTTTKIP---PPTSEHQDDECICSD------------TNDLSLLEQPL 243
            L ++F+L P S M ++ I    P  +    D+ +CS             TN  S    PL
Sbjct: 11   LKYIFSL-PNSLMASSLIQTLKPDLAPQDLDDLLCSPSHKQPQHESSSLTNSTSNDSTPL 69

Query: 244  SSKNSPSCTLSKDLRIERAWAHWKKLGQPKFIVAPMVDNSELPFRMLCRKYGAQAAYTPM 423
                SP+  LS++ RIERAWAHW KLG+PK IVAPMVDNSELPFR+LCRKYGA+AAYTPM
Sbjct: 70   LG--SPTGYLSRESRIERAWAHWTKLGRPKLIVAPMVDNSELPFRLLCRKYGAEAAYTPM 127

Query: 424  LHSRLFLENEKQRNMEFTTCKEDRPLFVQFCANDPDILLEAAKLVEQHCDYVDINLGCPQ 603
            LHSR+F ENEK RNMEFTTC+EDRPLFVQFCANDPD+LLEAA+ VE +CDYVD+NLGCPQ
Sbjct: 128  LHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNLGCPQ 187

Query: 604  RIARRGNYGAFLMDNLPVVRSLVQSLADNLHVPVSCKIRIFPDMQDTIKYARMLEDAGCF 783
            RIARRGNYGAFLMDNLP+V+++V+ LA NL VPVSCKIRIFP++QDTI YARMLEDAGC 
Sbjct: 188  RIARRGNYGAFLMDNLPLVKAIVEKLASNLQVPVSCKIRIFPNLQDTINYARMLEDAGCS 247

Query: 784  LLAVHGRTRDEKDGKKFRADWNAIKDVKAALRIPVLANGNIRHMDDVLSCLEETGVDGVL 963
            LLAVHGRTRDEKDGKKFRA+W+AI  VK A+RIPVLANGNIRHM+DV  CL+ETGV+GVL
Sbjct: 248  LLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVNDCLQETGVEGVL 307

Query: 964  SAEPLLENPALFAGFRTAEWVDKEEEGIEGDLLDQADLLV 1083
            SAE LLENPALFAGFRTAEW++  EE      LDQADLLV
Sbjct: 308  SAETLLENPALFAGFRTAEWIEGHEENTRDGNLDQADLLV 347


>ref|XP_002533266.1| tRNA-dihydrouridine synthase, putative [Ricinus communis]
            gi|223526922|gb|EEF29128.1| tRNA-dihydrouridine synthase,
            putative [Ricinus communis]
          Length = 426

 Score =  465 bits (1197), Expect = e-129
 Identities = 230/328 (70%), Positives = 263/328 (80%), Gaps = 8/328 (2%)
 Frame = +1

Query: 124  TLFPKSFMTTTKIPPPTSEHQDDECICSDTND----LSLLEQPLSSK----NSPSCTLSK 279
            +L P    + T+      ++ DDE +CS  +      S L   +SS      +PSC L+ 
Sbjct: 15   SLKPLMASSLTRTVAIDQDNDDDEVLCSSAHQEHTSFSTLPDTVSSSCLGSATPSCYLNG 74

Query: 280  DLRIERAWAHWKKLGQPKFIVAPMVDNSELPFRMLCRKYGAQAAYTPMLHSRLFLENEKQ 459
            + R++RAWAHW K+G+PK +VAPMVDNSELPFRMLCRKYGA AAYTPMLHSR+F ENEK 
Sbjct: 75   ESRVDRAWAHWNKIGKPKLLVAPMVDNSELPFRMLCRKYGADAAYTPMLHSRIFTENEKY 134

Query: 460  RNMEFTTCKEDRPLFVQFCANDPDILLEAAKLVEQHCDYVDINLGCPQRIARRGNYGAFL 639
            R  EFTTC EDRPLFVQFCANDPDILLEAA+ VE +CDYVDINLGCPQRIARRGNYGAFL
Sbjct: 135  RTQEFTTCNEDRPLFVQFCANDPDILLEAARKVEPYCDYVDINLGCPQRIARRGNYGAFL 194

Query: 640  MDNLPVVRSLVQSLADNLHVPVSCKIRIFPDMQDTIKYARMLEDAGCFLLAVHGRTRDEK 819
            MDNLP+V+SLV+ LA NL+VPVSCKIR+FP + DTI YARMLE+AGC LLAVHGRTRDEK
Sbjct: 195  MDNLPLVKSLVEKLALNLNVPVSCKIRLFPKLDDTISYARMLEEAGCSLLAVHGRTRDEK 254

Query: 820  DGKKFRADWNAIKDVKAALRIPVLANGNIRHMDDVLSCLEETGVDGVLSAEPLLENPALF 999
            DGKKFRADW AIK V+ A++IP+LANGN+RHMDDV +CLEETG DGVLSAE LLENPALF
Sbjct: 255  DGKKFRADWKAIKAVRNAVKIPLLANGNVRHMDDVRNCLEETGADGVLSAESLLENPALF 314

Query: 1000 AGFRTAEWVDKEEEGIEGDLLDQADLLV 1083
            AGFRTAEWV  +EE      LDQADLLV
Sbjct: 315  AGFRTAEWVVGDEESTRDGKLDQADLLV 342