BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00020405
         (374 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269066.2| PREDICTED: pentatricopeptide repeat-containi...   141   6e-32
emb|CBI17752.3| unnamed protein product [Vitis vinifera]              140   1e-31
ref|XP_002304774.1| predicted protein [Populus trichocarpa] gi|2...   112   4e-23
ref|XP_003598903.1| Pentatricopeptide repeat-containing protein ...   108   5e-22
ref|XP_003555182.1| PREDICTED: pentatricopeptide repeat-containi...   108   6e-22

>ref|XP_002269066.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20740-like [Vitis vinifera]
          Length = 1294

 Score =  141 bits (355), Expect = 6e-32
 Identities = 67/126 (53%), Positives = 86/126 (68%), Gaps = 2/126 (1%)
 Frame = +1

Query: 1   EKLNTHKQTNH*MPPKPETSTTNKLYFYYGHRKPSQNRPTVQGGLFSNRKTLNPNPPSTH 180
           EK       N  MPP+P+    +K YF+YGHRKPSQNRPTV GGLFSNR TLNP PP+  
Sbjct: 528 EKFAEGSLKNSKMPPQPQPPKPHKFYFFYGHRKPSQNRPTVHGGLFSNRTTLNPKPPTL- 586

Query: 181 KQKFPKPFEFTKWDPNSVQSTI--PTKTQSEKYFSIAQSLSPLARYICDSFRKHKHWCPA 354
            Q     F    WDP+S ++    P+KT  E++F IA++LSP+ARYICDSFRKH++W P 
Sbjct: 587 -QNPTTHFNLQNWDPDSPKALAIPPSKTPCERFFDIAKNLSPIARYICDSFRKHRNWGPP 645

Query: 355 IITDLD 372
           ++ DL+
Sbjct: 646 VVADLN 651


>emb|CBI17752.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  140 bits (352), Expect = 1e-31
 Identities = 64/114 (56%), Positives = 83/114 (72%), Gaps = 2/114 (1%)
 Frame = +1

Query: 37  MPPKPETSTTNKLYFYYGHRKPSQNRPTVQGGLFSNRKTLNPNPPSTHKQKFPKPFEFTK 216
           MPP+P+    +K YF+YGHRKPSQNRPTV GGLFSNR TLNP PP+   Q     F    
Sbjct: 1   MPPQPQPPKPHKFYFFYGHRKPSQNRPTVHGGLFSNRTTLNPKPPTL--QNPTTHFNLQN 58

Query: 217 WDPNSVQSTI--PTKTQSEKYFSIAQSLSPLARYICDSFRKHKHWCPAIITDLD 372
           WDP+S ++    P+KT  E++F IA++LSP+ARYICDSFRKH++W P ++ DL+
Sbjct: 59  WDPDSPKALAIPPSKTPCERFFDIAKNLSPIARYICDSFRKHRNWGPPVVADLN 112


>ref|XP_002304774.1| predicted protein [Populus trichocarpa] gi|222842206|gb|EEE79753.1|
           predicted protein [Populus trichocarpa]
          Length = 728

 Score =  112 bits (279), Expect = 4e-23
 Identities = 55/116 (47%), Positives = 76/116 (65%), Gaps = 6/116 (5%)
 Frame = +1

Query: 40  PPKPETSTTNKLYFYYGHRKPSQNRPTVQGGLFSNRKTLNPNPPSTHKQKFPKPFEFTKW 219
           PP P  S   K YF+YGHRKPSQNRP V+GGLF+NR+T+ P PP      F KPF+  KW
Sbjct: 5   PPPPPPSKPLKPYFFYGHRKPSQNRPVVRGGLFTNRQTVKPQPPKNPITPF-KPFDLHKW 63

Query: 220 D-----PNSVQSTIPTKTQSEKYFSIAQSLSPLARYICDSFRKHKH-WCPAIITDL 369
           D     P+  Q + P   +S    +++Q LSP+AR+I D+FRK+++ W P ++T+L
Sbjct: 64  DPQQNLPHQPQPSKPQSPRSRHSLALSQRLSPIARFILDAFRKNRNQWGPEVVTEL 119


>ref|XP_003598903.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355487951|gb|AES69154.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 767

 Score =  108 bits (270), Expect = 5e-22
 Identities = 59/117 (50%), Positives = 78/117 (66%), Gaps = 5/117 (4%)
 Frame = +1

Query: 37  MPPKPETSTTNKLYFYYGHRKPSQNRPTVQGGLFSNRKTLNPNPPSTHKQKFPKPFEFTK 216
           MPP+  T   NK YF+YGHRKPSQNRPTV+GGLFSNRKTL P  P + K      F+  K
Sbjct: 1   MPPQTPTPP-NKFYFFYGHRKPSQNRPTVRGGLFSNRKTLTPPKPKSTKP--TNSFQIQK 57

Query: 217 WDPNSV-QSTIPTKTQS---EKYFSIAQSLSPLARYICDSFRK-HKHWCPAIITDLD 372
           WDP+ + Q   P+ + S   E  FS +  LSP+AR+I D+FRK + +W P ++T+L+
Sbjct: 58  WDPHFLSQPNSPSPSPSPSPEATFSASLRLSPIARFILDAFRKNNNNWGPPVVTELN 114


>ref|XP_003555182.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20740-like [Glycine max]
          Length = 733

 Score =  108 bits (269), Expect = 6e-22
 Identities = 55/112 (49%), Positives = 71/112 (63%), Gaps = 2/112 (1%)
 Frame = +1

Query: 40  PPKPETSTTNKLYFYYGHRKPSQNRPTVQGGLFSNRKTLNPNPPSTHKQKFPKPFEFTKW 219
           PP      TNK YF+YGHR PSQNRPTV+GGLFSNR+TLNPNP  +  +   KPF    W
Sbjct: 16  PPFTTPKPTNKFYFFYGHRNPSQNRPTVRGGLFSNRQTLNPNP--SQPKPTTKPFNIKNW 73

Query: 220 DPNSVQSTIPTKTQSEKYFSIAQ-SLSPLARYICDSFRKHKH-WCPAIITDL 369
           DP+ + +  P    S    S A   LSP+AR+I D+FR++ + WCP +  +L
Sbjct: 74  DPHFLSN--PNSNPSPSTLSSASLRLSPIARFIVDAFRRNDNKWCPNVAAEL 123