BLASTX nr result
ID: Coptis23_contig00020401
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00020401
(693 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003590425.1| DEAD-box ATP-dependent RNA helicase [Medicag... 86 4e-25
gb|AFK42096.1| unknown [Medicago truncatula] 86 5e-25
ref|XP_004171505.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 90 1e-24
ref|XP_004150128.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 90 1e-24
ref|XP_002519437.1| dead box ATP-dependent RNA helicase, putativ... 82 4e-24
>ref|XP_003590425.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355479473|gb|AES60676.1| DEAD-box ATP-dependent RNA
helicase [Medicago truncatula]
Length = 491
Score = 85.9 bits (211), Expect(3) = 4e-25
Identities = 42/59 (71%), Positives = 51/59 (86%)
Frame = +3
Query: 6 LYVEIKYVCPSRIQAKTLPMILNKPYKDLISQAPNGCGKTTCFVLGMLSRVDLDLIAPK 182
LYVE+K+ PS+IQAK+LPMILN P++DLI+QA NG GKTTCF LGMLSRVD +L AP+
Sbjct: 94 LYVEMKFEKPSKIQAKSLPMILNPPHRDLIAQAHNGSGKTTCFNLGMLSRVDPNLQAPQ 152
Score = 49.3 bits (116), Expect(3) = 4e-25
Identities = 22/24 (91%), Positives = 23/24 (95%)
Frame = +2
Query: 179 QVLCICPTRELAIQNMEVLRKMGK 250
Q LCICPTRELAIQN+EVLRKMGK
Sbjct: 152 QALCICPTRELAIQNIEVLRKMGK 175
Score = 25.8 bits (55), Expect(3) = 4e-25
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 244 G*ASILAIPKNPKRLDNPQDTNITSCVAIMDQIVIGTPGTI 366
G +S A+P +D + IM Q+VIGTPGT+
Sbjct: 178 GISSECAVP-----MDRRDSIPVMKRAPIMAQVVIGTPGTM 213
>gb|AFK42096.1| unknown [Medicago truncatula]
Length = 491
Score = 85.9 bits (211), Expect(3) = 5e-25
Identities = 42/59 (71%), Positives = 51/59 (86%)
Frame = +3
Query: 6 LYVEIKYVCPSRIQAKTLPMILNKPYKDLISQAPNGCGKTTCFVLGMLSRVDLDLIAPK 182
LYVE+K+ PS+IQAK+LPMILN P++DLI+QA NG GKTTCF LGMLSRVD +L AP+
Sbjct: 94 LYVEMKFEKPSKIQAKSLPMILNPPHRDLIAQAHNGSGKTTCFNLGMLSRVDPNLQAPQ 152
Score = 49.3 bits (116), Expect(3) = 5e-25
Identities = 22/24 (91%), Positives = 23/24 (95%)
Frame = +2
Query: 179 QVLCICPTRELAIQNMEVLRKMGK 250
Q LCICPTRELAIQN+EVLRKMGK
Sbjct: 152 QALCICPTRELAIQNIEVLRKMGK 175
Score = 25.4 bits (54), Expect(3) = 5e-25
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 244 G*ASILAIPKNPKRLDNPQDTNITSCVAIMDQIVIGTPGTI 366
G +S A+P +D + IM Q+VIGTPGT+
Sbjct: 178 GISSECAVP-----MDRRDPIPVMKRAPIMAQVVIGTPGTM 213
>ref|XP_004171505.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 38-like [Cucumis
sativus]
Length = 508
Score = 89.7 bits (221), Expect(3) = 1e-24
Identities = 44/61 (72%), Positives = 52/61 (85%)
Frame = +3
Query: 6 LYVEIKYVCPSRIQAKTLPMILNKPYKDLISQAPNGCGKTTCFVLGMLSRVDLDLIAPKC 185
LYVE+K+ PS+IQA +LPMIL PYKDLI+QA NG GKTTCFVLGMLSRVD++L AP+
Sbjct: 110 LYVEMKFHKPSKIQAISLPMILTPPYKDLIAQAHNGSGKTTCFVLGMLSRVDVNLKAPQA 169
Query: 186 F 188
F
Sbjct: 170 F 170
Score = 45.4 bits (106), Expect(3) = 1e-24
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = +2
Query: 179 QVLCICPTRELAIQNMEVLRKMGK 250
Q CICPTRELA+QN+EVL+KMGK
Sbjct: 168 QAFCICPTRELAMQNIEVLKKMGK 191
Score = 23.9 bits (50), Expect(3) = 1e-24
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +1
Query: 328 IMDQIVIGTPGTI 366
I Q+VIGTPGTI
Sbjct: 217 ITAQVVIGTPGTI 229
>ref|XP_004150128.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 38-like [Cucumis
sativus]
Length = 508
Score = 89.7 bits (221), Expect(3) = 1e-24
Identities = 44/61 (72%), Positives = 52/61 (85%)
Frame = +3
Query: 6 LYVEIKYVCPSRIQAKTLPMILNKPYKDLISQAPNGCGKTTCFVLGMLSRVDLDLIAPKC 185
LYVE+K+ PS+IQA +LPMIL PYKDLI+QA NG GKTTCFVLGMLSRVD++L AP+
Sbjct: 110 LYVEMKFHKPSKIQAISLPMILTPPYKDLIAQAHNGSGKTTCFVLGMLSRVDVNLKAPQA 169
Query: 186 F 188
F
Sbjct: 170 F 170
Score = 45.4 bits (106), Expect(3) = 1e-24
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = +2
Query: 179 QVLCICPTRELAIQNMEVLRKMGK 250
Q CICPTRELA+QN+EVL+KMGK
Sbjct: 168 QAFCICPTRELAMQNIEVLKKMGK 191
Score = 23.9 bits (50), Expect(3) = 1e-24
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +1
Query: 328 IMDQIVIGTPGTI 366
I Q+VIGTPGTI
Sbjct: 217 ITAQVVIGTPGTI 229
>ref|XP_002519437.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223541300|gb|EEF42851.1| dead box ATP-dependent RNA
helicase, putative [Ricinus communis]
Length = 503
Score = 81.6 bits (200), Expect(3) = 4e-24
Identities = 39/52 (75%), Positives = 45/52 (86%)
Frame = +3
Query: 6 LYVEIKYVCPSRIQAKTLPMILNKPYKDLISQAPNGCGKTTCFVLGMLSRVD 161
LYVE+K+ PS+IQA +LPMIL PYKDL++QA NG GKTTCFVLGMLSRVD
Sbjct: 114 LYVEMKFQKPSKIQAISLPMILTPPYKDLVAQAHNGSGKTTCFVLGMLSRVD 165
Score = 48.5 bits (114), Expect(3) = 4e-24
Identities = 20/25 (80%), Positives = 24/25 (96%)
Frame = +2
Query: 176 TQVLCICPTRELAIQNMEVLRKMGK 250
TQ LCICPTREL++QN+EVLR+MGK
Sbjct: 171 TQALCICPTRELSLQNLEVLRRMGK 195
Score = 27.3 bits (59), Expect(3) = 4e-24
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 244 G*ASILAIPKNPKRLDNPQDTNITSCVAIMDQIVIGTPGTI 366
G +S A+P + D P+ + S Q+VIGTPGTI
Sbjct: 198 GISSHCAVPMDKGNNDRPKPLSYISA-----QVVIGTPGTI 233