BLASTX nr result
ID: Coptis23_contig00020365
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00020365
(1555 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitoc... 366 0.0
emb|CBI18448.3| unnamed protein product [Vitis vinifera] 366 0.0
ref|XP_004158518.1| PREDICTED: RNA pseudourine synthase 3, mitoc... 340 e-176
ref|XP_004138653.1| PREDICTED: RNA pseudourine synthase 3, mitoc... 339 e-176
gb|EAZ43360.1| hypothetical protein OsJ_27960 [Oryza sativa Japo... 337 e-164
>ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Vitis
vinifera]
Length = 479
Score = 366 bits (939), Expect(2) = 0.0
Identities = 174/213 (81%), Positives = 192/213 (90%), Gaps = 1/213 (0%)
Frame = +3
Query: 813 SWNDACEATMQRYWALVIGSPKEKQGVIHAPLSKVLLNDGKIERVIIAHPSGIEASQEAI 992
+W+DACEAT QRYWALVIGSPK+K+GVIHAPLSKVLL+DGK ERVI+A+ SG+EASQEAI
Sbjct: 267 AWDDACEATCQRYWALVIGSPKQKEGVIHAPLSKVLLDDGKTERVILANQSGLEASQEAI 326
Query: 993 TEYRVLGPTINGCSWVELLPHTGRKHQLRVHCAEALGTPIVGDYKYGWYVHSKWKQMPRV 1172
TEYRVLGP INGCSW+EL P T RKHQLRVHCAEALGTPIVGDYKYGW+VH +WKQMPRV
Sbjct: 327 TEYRVLGPMINGCSWIELCPRTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRV 386
Query: 1173 DFEQTTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFQEVLDGK-RQLDK 1349
D E TTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCREL+LPNIAKF +LD K + ++
Sbjct: 387 DLEPTTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELILPNIAKFLPILDPKPKNQNQ 446
Query: 1350 QSVLSSKPDLLRFVAPMPSHMKISWNLMSSYLV 1448
LS KPD+LRFVA MP+HMKISWNLMSSYLV
Sbjct: 447 YPKLSLKPDILRFVASMPNHMKISWNLMSSYLV 479
Score = 341 bits (875), Expect(2) = 0.0
Identities = 173/262 (66%), Positives = 205/262 (78%)
Frame = +1
Query: 25 KAVLPTVRHYSXXXXXXXXXXXXXXXVSNNIAQLGSPKKEIKPRQLLSLPAFPAKLQHPL 204
+ + P VRHYS VSNN+AQLGSPK+ KPRQLLSLP FPA HPL
Sbjct: 10 QGLFPVVRHYSRIAPPRPASAAPVIRVSNNVAQLGSPKEGPKPRQLLSLPPFPA---HPL 66
Query: 205 PGRNLGGHYGQPSHVTAVTWLKYYFDEICRSVIQSHFNKGLVQMECSDRIDTSKGEQDLQ 384
PG++L G P+HVTA++W+KYYFDEI SV+QSHFNKGLV ME S+ D+S ++
Sbjct: 67 PGKSLVNVSGLPTHVTAISWIKYYFDEIPGSVVQSHFNKGLVHMERSNLDDSSLEKEGQI 126
Query: 385 QSLRKINPNEIMEVGAKIYVPVSVAETKISKRFNVIPSGTLYPNADEIEYLQRLVMYKDS 564
+ LRKI PNE+ME G +IYVPVSVAE +ISKRF+ IPSGTL+PNADEIEYLQRLV YKD
Sbjct: 127 KPLRKIKPNEVMEAGTRIYVPVSVAEARISKRFDTIPSGTLHPNADEIEYLQRLVTYKDP 186
Query: 565 AIMILNKPPKLPVKGNLPVHNSMDALAAGALSYGFEEGPKLVHRLDRESSGLLLMGRSKE 744
AI++LNKPPK+P+KGNLPVHNSMDALAA AL++ +EEGPKLVHRLDRESSGLLLMGR+KE
Sbjct: 187 AILVLNKPPKVPLKGNLPVHNSMDALAAAALTFDYEEGPKLVHRLDRESSGLLLMGRTKE 246
Query: 745 SLTRLQWLFSDTIKAKSPYKSF 810
S+ L WLFSD KAKS K++
Sbjct: 247 SVAHLHWLFSDINKAKSLSKAW 268
>emb|CBI18448.3| unnamed protein product [Vitis vinifera]
Length = 481
Score = 366 bits (939), Expect(2) = 0.0
Identities = 174/213 (81%), Positives = 192/213 (90%), Gaps = 1/213 (0%)
Frame = +3
Query: 813 SWNDACEATMQRYWALVIGSPKEKQGVIHAPLSKVLLNDGKIERVIIAHPSGIEASQEAI 992
+W+DACEAT QRYWALVIGSPK+K+GVIHAPLSKVLL+DGK ERVI+A+ SG+EASQEAI
Sbjct: 269 AWDDACEATCQRYWALVIGSPKQKEGVIHAPLSKVLLDDGKTERVILANQSGLEASQEAI 328
Query: 993 TEYRVLGPTINGCSWVELLPHTGRKHQLRVHCAEALGTPIVGDYKYGWYVHSKWKQMPRV 1172
TEYRVLGP INGCSW+EL P T RKHQLRVHCAEALGTPIVGDYKYGW+VH +WKQMPRV
Sbjct: 329 TEYRVLGPMINGCSWIELCPRTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRV 388
Query: 1173 DFEQTTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFQEVLDGK-RQLDK 1349
D E TTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCREL+LPNIAKF +LD K + ++
Sbjct: 389 DLEPTTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELILPNIAKFLPILDPKPKNQNQ 448
Query: 1350 QSVLSSKPDLLRFVAPMPSHMKISWNLMSSYLV 1448
LS KPD+LRFVA MP+HMKISWNLMSSYLV
Sbjct: 449 YPKLSLKPDILRFVASMPNHMKISWNLMSSYLV 481
Score = 332 bits (851), Expect(2) = 0.0
Identities = 170/264 (64%), Positives = 205/264 (77%), Gaps = 2/264 (0%)
Frame = +1
Query: 25 KAVLPTVRHYSXXXXXXXXXXXXXXXVSNNIAQLGSPKKEIKPRQLLSLPAFPAKLQHPL 204
+ + P VRHYS VSNN+AQLGSPK+ KPRQLLSLP FPA HPL
Sbjct: 10 QGLFPVVRHYSRIAPPRPASAAPVIRVSNNVAQLGSPKEGPKPRQLLSLPPFPA---HPL 66
Query: 205 PGRNLGGHYGQPSHVTAVTWLKYYFDEICRSVIQSHFNKGLVQMECSDRIDTSKGEQDLQ 384
PG++L G P+HVTA++W+KYYFDEI SV+QSHFNKGLV ME S+ D+S ++
Sbjct: 67 PGKSLVNVSGLPTHVTAISWIKYYFDEIPGSVVQSHFNKGLVHMERSNLDDSSLEKEGQI 126
Query: 385 QSLRKINPNEIMEVGAKIYVPVSVAETKISKRFNVIPSGTLYPNADEIEYLQR--LVMYK 558
+ LRKI PNE+ME G +IYVPVSVAE +ISKRF+ IPSGTL+PNADEIEYLQR L+ ++
Sbjct: 127 KPLRKIKPNEVMEAGTRIYVPVSVAEARISKRFDTIPSGTLHPNADEIEYLQRLWLLKFQ 186
Query: 559 DSAIMILNKPPKLPVKGNLPVHNSMDALAAGALSYGFEEGPKLVHRLDRESSGLLLMGRS 738
D AI++LNKPPK+P+KGNLPVHNSMDALAA AL++ +EEGPKLVHRLDRESSGLLLMGR+
Sbjct: 187 DPAILVLNKPPKVPLKGNLPVHNSMDALAAAALTFDYEEGPKLVHRLDRESSGLLLMGRT 246
Query: 739 KESLTRLQWLFSDTIKAKSPYKSF 810
KES+ L WLFSD KAKS K++
Sbjct: 247 KESVAHLHWLFSDINKAKSLSKAW 270
>ref|XP_004158518.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Cucumis
sativus]
Length = 471
Score = 340 bits (871), Expect(2) = e-176
Identities = 163/212 (76%), Positives = 182/212 (85%)
Frame = +3
Query: 813 SWNDACEATMQRYWALVIGSPKEKQGVIHAPLSKVLLNDGKIERVIIAHPSGIEASQEAI 992
+W +AC AT Q+YWALVIG P+E++GVI APLSKVLL+DGK ERVI+A+ + IEASQEAI
Sbjct: 262 AWEEACNATYQKYWALVIGCPREREGVISAPLSKVLLDDGKTERVILANKASIEASQEAI 321
Query: 993 TEYRVLGPTINGCSWVELLPHTGRKHQLRVHCAEALGTPIVGDYKYGWYVHSKWKQMPRV 1172
TEYRVLGPTINGCSW+EL P T RKHQLR+HCAEALGTPIVGDYKYGW+VH +WKQMPRV
Sbjct: 322 TEYRVLGPTINGCSWIELCPRTSRKHQLRIHCAEALGTPIVGDYKYGWFVHRRWKQMPRV 381
Query: 1173 DFEQTTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFQEVLDGKRQLDKQ 1352
D E +G+PYK+RRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIAKF V GK +
Sbjct: 382 DVEPISGRPYKLRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFLNVFYGKG--PNR 439
Query: 1353 SVLSSKPDLLRFVAPMPSHMKISWNLMSSYLV 1448
V S DLLRFVA MPSHM+ISWNLMSSYLV
Sbjct: 440 PVSSFDSDLLRFVARMPSHMRISWNLMSSYLV 471
Score = 305 bits (782), Expect(2) = e-176
Identities = 161/264 (60%), Positives = 194/264 (73%)
Frame = +1
Query: 19 LRKAVLPTVRHYSXXXXXXXXXXXXXXXVSNNIAQLGSPKKEIKPRQLLSLPAFPAKLQH 198
+R+ +L R YS VSNNIAQLGSPK+ K RQLLSLP FP +
Sbjct: 5 MRRHLLLATRCYSRISPPPPAYAKPIIRVSNNIAQLGSPKEGPKARQLLSLPPFPG---Y 61
Query: 199 PLPGRNLGGHYGQPSHVTAVTWLKYYFDEICRSVIQSHFNKGLVQMECSDRIDTSKGEQD 378
PLPG+N G G+ +HVTA+ W+KYYFDEI S IQSHF KGLVQ+EC E+
Sbjct: 62 PLPGKNQVGVSGESTHVTAIRWVKYYFDEIQDSQIQSHFRKGLVQVECPQL--GGLDEKG 119
Query: 379 LQQSLRKINPNEIMEVGAKIYVPVSVAETKISKRFNVIPSGTLYPNADEIEYLQRLVMYK 558
+ +RKI EIME GA+I++PVSVAE K+++RF+ IPSGTLYPNADEI+YLQRLV YK
Sbjct: 120 NLKPMRKIRSGEIMETGARIHLPVSVAEMKVARRFDTIPSGTLYPNADEIKYLQRLVKYK 179
Query: 559 DSAIMILNKPPKLPVKGNLPVHNSMDALAAGALSYGFEEGPKLVHRLDRESSGLLLMGRS 738
DSAI++LNKPPKLPVKG LPVHNSMDALA ALSY +++GPKLVHRLDRESSG+LLMGR+
Sbjct: 180 DSAIIVLNKPPKLPVKGTLPVHNSMDALADAALSYDYDDGPKLVHRLDRESSGILLMGRT 239
Query: 739 KESLTRLQWLFSDTIKAKSPYKSF 810
KES+ LQWLFS+ AK K++
Sbjct: 240 KESVDHLQWLFSNIRNAKFTCKAW 263
>ref|XP_004138653.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Cucumis
sativus]
Length = 471
Score = 339 bits (870), Expect(2) = e-176
Identities = 162/212 (76%), Positives = 182/212 (85%)
Frame = +3
Query: 813 SWNDACEATMQRYWALVIGSPKEKQGVIHAPLSKVLLNDGKIERVIIAHPSGIEASQEAI 992
+W +AC AT Q+YWALVIG P+E++GVI APLSKVLL+DGK ERV++A+ + IEASQEAI
Sbjct: 262 AWEEACNATYQKYWALVIGCPREREGVISAPLSKVLLDDGKTERVVLANKASIEASQEAI 321
Query: 993 TEYRVLGPTINGCSWVELLPHTGRKHQLRVHCAEALGTPIVGDYKYGWYVHSKWKQMPRV 1172
TEYRVLGPTINGCSW+EL P T RKHQLR+HCAEALGTPIVGDYKYGW+VH +WKQMPRV
Sbjct: 322 TEYRVLGPTINGCSWIELCPRTSRKHQLRIHCAEALGTPIVGDYKYGWFVHRRWKQMPRV 381
Query: 1173 DFEQTTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFQEVLDGKRQLDKQ 1352
D E +G+PYK+RRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIAKF V GK +
Sbjct: 382 DVEPISGRPYKLRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFLNVFYGKG--PNR 439
Query: 1353 SVLSSKPDLLRFVAPMPSHMKISWNLMSSYLV 1448
V S DLLRFVA MPSHM+ISWNLMSSYLV
Sbjct: 440 PVSSFDSDLLRFVARMPSHMRISWNLMSSYLV 471
Score = 305 bits (782), Expect(2) = e-176
Identities = 161/264 (60%), Positives = 194/264 (73%)
Frame = +1
Query: 19 LRKAVLPTVRHYSXXXXXXXXXXXXXXXVSNNIAQLGSPKKEIKPRQLLSLPAFPAKLQH 198
+R+ +L R YS VSNNIAQLGSPK+ K RQLLSLP FP +
Sbjct: 5 MRRHLLLATRCYSRISPPPPAYAKPIIRVSNNIAQLGSPKEGPKARQLLSLPPFPG---Y 61
Query: 199 PLPGRNLGGHYGQPSHVTAVTWLKYYFDEICRSVIQSHFNKGLVQMECSDRIDTSKGEQD 378
PLPG+N G G+ +HVTA+ W+KYYFDEI S IQSHF KGLVQ+EC E+
Sbjct: 62 PLPGKNQVGVSGESTHVTAIRWVKYYFDEIQDSQIQSHFRKGLVQVECPQL--GGLDEKG 119
Query: 379 LQQSLRKINPNEIMEVGAKIYVPVSVAETKISKRFNVIPSGTLYPNADEIEYLQRLVMYK 558
+ +RKI EIME GA+I++PVSVAE K+++RF+ IPSGTLYPNADEI+YLQRLV YK
Sbjct: 120 NLKPMRKIRSGEIMETGARIHLPVSVAEMKVARRFDTIPSGTLYPNADEIKYLQRLVKYK 179
Query: 559 DSAIMILNKPPKLPVKGNLPVHNSMDALAAGALSYGFEEGPKLVHRLDRESSGLLLMGRS 738
DSAI++LNKPPKLPVKG LPVHNSMDALA ALSY +++GPKLVHRLDRESSG+LLMGR+
Sbjct: 180 DSAIIVLNKPPKLPVKGTLPVHNSMDALADAALSYDYDDGPKLVHRLDRESSGILLMGRT 239
Query: 739 KESLTRLQWLFSDTIKAKSPYKSF 810
KES+ LQWLFS+ AK K++
Sbjct: 240 KESVDHLQWLFSNIRNAKFTCKAW 263
>gb|EAZ43360.1| hypothetical protein OsJ_27960 [Oryza sativa Japonica Group]
Length = 509
Score = 337 bits (865), Expect(2) = e-164
Identities = 156/211 (73%), Positives = 184/211 (87%)
Frame = +3
Query: 816 WNDACEATMQRYWALVIGSPKEKQGVIHAPLSKVLLNDGKIERVIIAHPSGIEASQEAIT 995
WN ACEA MQRYWALVIG+PKE++G+I APLSKVLL+DGK ERVI+AHPSGI+ +QEA+T
Sbjct: 300 WNAACEAYMQRYWALVIGTPKEREGIISAPLSKVLLDDGKAERVILAHPSGIDGAQEAVT 359
Query: 996 EYRVLGPTINGCSWVELLPHTGRKHQLRVHCAEALGTPIVGDYKYGWYVHSKWKQMPRVD 1175
YRV+GPTI+GCSW+EL P TGRKHQLRVHCAEALGTPIVGDYKYGW+VH +WKQ P+ D
Sbjct: 360 AYRVMGPTIHGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVHQRWKQNPQPD 419
Query: 1176 FEQTTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFQEVLDGKRQLDKQS 1355
FE TG+PYK+RRPEGL++QKGSVLSKVPLLHLHCRE+V+PNIAKF +G+ +
Sbjct: 420 FEPFTGEPYKLRRPEGLEIQKGSVLSKVPLLHLHCREMVIPNIAKFLS-SNGEWHENGAP 478
Query: 1356 VLSSKPDLLRFVAPMPSHMKISWNLMSSYLV 1448
KP+LLRF+APMP+HMKISWN+MSSYLV
Sbjct: 479 WSKEKPNLLRFIAPMPAHMKISWNIMSSYLV 509
Score = 268 bits (685), Expect(2) = e-164
Identities = 136/230 (59%), Positives = 172/230 (74%), Gaps = 1/230 (0%)
Frame = +1
Query: 109 NNIAQLGSPKKEIKPRQLLSLPAFPAKLQ-HPLPGRNLGGHYGQPSHVTAVTWLKYYFDE 285
+N+A+LG PK +PRQLLSLP FP PLPGR P VTAV+W+K+Y +
Sbjct: 70 SNVARLGKPKPGPRPRQLLSLPPFPGGGDGDPLPGRKAAA----PRRVTAVSWVKHYLAD 125
Query: 286 ICRSVIQSHFNKGLVQMECSDRIDTSKGEQDLQQSLRKINPNEIMEVGAKIYVPVSVAET 465
+ + V+Q+HFNK LV ECSD + + + + L+KI N++ME G +I++PVSVAE
Sbjct: 126 VPQEVVQAHFNKRLVYSECSDHEVSVETIKSQKHHLKKIKHNDVMEPGMRIHLPVSVAEG 185
Query: 466 KISKRFNVIPSGTLYPNADEIEYLQRLVMYKDSAIMILNKPPKLPVKGNLPVHNSMDALA 645
+I KR+ IP+ TL+PN DEIEYL+RLV++KDSAI++LNKPPK+P+KGNLPVHNSMD LA
Sbjct: 186 EIKKRYETIPTATLHPNKDEIEYLRRLVIHKDSAILVLNKPPKVPMKGNLPVHNSMDVLA 245
Query: 646 AGALSYGFEEGPKLVHRLDRESSGLLLMGRSKESLTRLQWLFSDTIKAKS 795
A ALSYG EEGPKLVHRLDRESSGLLL GR+KES TRL WLF+ AK+
Sbjct: 246 AAALSYGNEEGPKLVHRLDRESSGLLLFGRTKESFTRLHWLFTSVNLAKT 295