BLASTX nr result
ID: Coptis23_contig00020359
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00020359
(305 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003553731.1| PREDICTED: LOW QUALITY PROTEIN: putative pen... 130 8e-29
gb|AAO45757.1| selenium binding protein-like protein [Cucumis me... 129 3e-28
ref|XP_003520814.1| PREDICTED: putative pentatricopeptide repeat... 127 9e-28
ref|XP_004139361.1| PREDICTED: putative pentatricopeptide repeat... 127 1e-27
ref|NP_187175.2| mitochondrial editing factor 19 [Arabidopsis th... 122 4e-26
>ref|XP_003553731.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g05240-like [Glycine max]
Length = 552
Score = 130 bits (328), Expect = 8e-29
Identities = 59/100 (59%), Positives = 78/100 (78%)
Frame = -1
Query: 305 LKACAAVLDIRFGKCVHTRILKNGYESDLYSSTSLMHIYVCCADLGSGEKLFEESPKWNV 126
LKAC A+ D GKC+H I+K+G+E+D Y++T L+H+YV CAD+ SG K+F+ P WNV
Sbjct: 100 LKACCAIADQDCGKCIHCCIVKSGFEADAYTATGLLHMYVSCADMKSGLKVFDNIPIWNV 159
Query: 125 VGWTTLIAGYVNNDRASDAIRVFKEMECEGVEPNEITMVN 6
V WT LIAGYVNN++ +A++VFK+M GVEPNEITMVN
Sbjct: 160 VAWTCLIAGYVNNNQPYEALKVFKDMSHCGVEPNEITMVN 199
Score = 60.8 bits (146), Expect = 1e-07
Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Frame = -1
Query: 305 LKACAAVLDIRFGKCVHTRILKNGYESDLYSSTSLMHIYVCCADLGSGEKLFEESPKWNV 126
L CA + + G+ VH + K G +D+ +T+L+ +Y LGS +K+F K +V
Sbjct: 309 LSVCAHLCALALGQTVHAYLXKTGIGTDISLATALLDMYAKTGGLGSAQKIFSSLQKRDV 368
Query: 125 VGWTTLIAGYVNNDRASDAIRVFKEM-ECEGVEPNEITMVNV 3
V WT++I G + ++A+ +F+ M E + P+ IT + V
Sbjct: 369 VMWTSMINGLAMHGDGNEALGMFQTMHEDSSLVPDHITYIGV 410
Score = 59.3 bits (142), Expect = 3e-07
Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 7/105 (6%)
Frame = -1
Query: 296 CAAVLDIRFGKCVHTRILKNGYE-------SDLYSSTSLMHIYVCCADLGSGEKLFEESP 138
CA D G+ VH I K GY+ S++ +T+++ +Y C LF + P
Sbjct: 204 CARSRDFDTGQWVHQHIRKAGYDPFMSTSNSNIILATAILEMYAKCGSFKIARDLFNKMP 263
Query: 137 KWNVVGWTTLIAGYVNNDRASDAIRVFKEMECEGVEPNEITMVNV 3
+ N+V W ++I Y +R +A+ +F +M G+ P++ T ++V
Sbjct: 264 QRNIVSWNSMINAYNQYERHKEALDLFFDMWTSGIYPDKATFLSV 308
>gb|AAO45757.1| selenium binding protein-like protein [Cucumis melo subsp. melo]
Length = 565
Score = 129 bits (323), Expect = 3e-28
Identities = 58/98 (59%), Positives = 79/98 (80%)
Frame = -1
Query: 305 LKACAAVLDIRFGKCVHTRILKNGYESDLYSSTSLMHIYVCCADLGSGEKLFEESPKWNV 126
LK C+A+ + +G+ VH RI+K G+E D+Y+S+ L+++YV C DL SG K+FE PKWNV
Sbjct: 112 LKVCSAIDLLVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNV 171
Query: 125 VGWTTLIAGYVNNDRASDAIRVFKEMECEGVEPNEITM 12
V WT+LIAG+VNND+ +A+R+FK+ME EGVEPNEITM
Sbjct: 172 VAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPNEITM 209
Score = 61.6 bits (148), Expect = 6e-08
Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 7/108 (6%)
Frame = -1
Query: 305 LKACAAVLDIRFGKCVHTRILKNGYES-------DLYSSTSLMHIYVCCADLGSGEKLFE 147
L A A DI GK V R+ + G + ++ +T++M +Y C L + LF+
Sbjct: 213 LAAAARCRDIHTGKLVRYRLRQLGLDPFHTNSRFNVILATAIMDMYAKCGKLVTARNLFD 272
Query: 146 ESPKWNVVGWTTLIAGYVNNDRASDAIRVFKEMECEGVEPNEITMVNV 3
+ P+ N+V W ++I+ + R ++A+R+F +ME G PN+ T ++V
Sbjct: 273 KMPQRNLVVWNSMISAFSQYGRGAEALRLFVDMELAGFVPNKATFLSV 320
Score = 60.8 bits (146), Expect = 1e-07
Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Frame = -1
Query: 305 LKACAAVLDIRFGKCVHTRILKNGYESDLYSSTSLMHIYVCCADLGSGEKLFEESPKWNV 126
++AC + G+ +H R+LK + + T+LM +Y D + K+F + K +V
Sbjct: 321 IRACTHLRFRSTGQSLHARVLKANFHEFVAIGTALMDMYAKSGDADTALKIFSKLRKKDV 380
Query: 125 VGWTTLIAGYVNNDRASDAIRVFKEMECEG-VEPNEITMVNV 3
+ WTT+I+G + +A+ VF+ ME E V P++IT + V
Sbjct: 381 MAWTTMISGLAIQGKGKEALNVFRRMEEEAEVAPDQITYIAV 422
>ref|XP_003520814.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240-like [Glycine max]
Length = 563
Score = 127 bits (319), Expect = 9e-28
Identities = 56/100 (56%), Positives = 77/100 (77%)
Frame = -1
Query: 305 LKACAAVLDIRFGKCVHTRILKNGYESDLYSSTSLMHIYVCCADLGSGEKLFEESPKWNV 126
LKAC + D GKC+H+ I+K+G+E+D Y++T L+H+YV CAD+ SG K+F+ PKWNV
Sbjct: 111 LKACCVIADQDCGKCIHSCIVKSGFEADAYTATGLLHMYVSCADMKSGLKVFDNIPKWNV 170
Query: 125 VGWTTLIAGYVNNDRASDAIRVFKEMECEGVEPNEITMVN 6
V WT LIAGYV N++ +A++VF++M VEPNEITMVN
Sbjct: 171 VAWTCLIAGYVKNNQPYEALKVFEDMSHWNVEPNEITMVN 210
Score = 65.9 bits (159), Expect = 3e-09
Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 7/108 (6%)
Frame = -1
Query: 305 LKACAAVLDIRFGKCVHTRILKNGYE-------SDLYSSTSLMHIYVCCADLGSGEKLFE 147
L ACA DI G+ VH RI K GY+ S++ +T+++ +Y C L LF
Sbjct: 212 LIACAHSRDIDTGRWVHQRIRKAGYDPFMSTSNSNIILATAILEMYAKCGRLKIARDLFN 271
Query: 146 ESPKWNVVGWTTLIAGYVNNDRASDAIRVFKEMECEGVEPNEITMVNV 3
+ P+ N+V W ++I Y +R +A+ +F +M GV P++ T ++V
Sbjct: 272 KMPQRNIVSWNSMINAYNQYERHQEALDLFFDMWTSGVYPDKATFLSV 319
Score = 63.2 bits (152), Expect = 2e-08
Identities = 32/102 (31%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Frame = -1
Query: 305 LKACAAVLDIRFGKCVHTRILKNGYESDLYSSTSLMHIYVCCADLGSGEKLFEESPKWNV 126
L CA + G+ VH +LK G +D+ +T+L+ +Y +LG+ +K+F K +V
Sbjct: 320 LSVCAHQCALALGQTVHAYLLKTGIATDISLATALLDMYAKTGELGNAQKIFSSLQKKDV 379
Query: 125 VGWTTLIAGYVNNDRASDAIRVFKEM-ECEGVEPNEITMVNV 3
V WT++I G + ++A+ +F+ M E + P+ IT + V
Sbjct: 380 VMWTSMINGLAMHGHGNEALSMFQTMQEDSSLVPDHITYIGV 421
>ref|XP_004139361.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240-like [Cucumis sativus]
gi|449525900|ref|XP_004169954.1| PREDICTED: putative
pentatricopeptide repeat-containing protein
At3g05240-like [Cucumis sativus]
Length = 562
Score = 127 bits (318), Expect = 1e-27
Identities = 57/98 (58%), Positives = 78/98 (79%)
Frame = -1
Query: 305 LKACAAVLDIRFGKCVHTRILKNGYESDLYSSTSLMHIYVCCADLGSGEKLFEESPKWNV 126
LK C+ + + +G+ VH RI+K G+E D+Y+S+ L+++YV C DL SG K+FE PKWNV
Sbjct: 112 LKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNV 171
Query: 125 VGWTTLIAGYVNNDRASDAIRVFKEMECEGVEPNEITM 12
V WT+LIAG+VNND+ +A+R+FK+ME EGVEPNEITM
Sbjct: 172 VAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPNEITM 209
Score = 68.2 bits (165), Expect = 7e-10
Identities = 35/108 (32%), Positives = 61/108 (56%), Gaps = 7/108 (6%)
Frame = -1
Query: 305 LKACAAVLDIRFGKCVHTRILKNGYES-------DLYSSTSLMHIYVCCADLGSGEKLFE 147
L A A DI GK VH R+ + G++ ++ +T++M +Y C L + LF+
Sbjct: 213 LAAAARCRDIHTGKLVHDRLRQLGFDPFDTNSCFNVILATAIMDMYAKCGKLVTARNLFD 272
Query: 146 ESPKWNVVGWTTLIAGYVNNDRASDAIRVFKEMECEGVEPNEITMVNV 3
+ P+ N+V W ++I+ Y R ++A+R+F +ME G PN+ T ++V
Sbjct: 273 KMPQRNLVVWNSMISAYSQYGRGAEALRLFVDMEMAGFVPNKATFLSV 320
Score = 57.4 bits (137), Expect = 1e-06
Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Frame = -1
Query: 305 LKACAAVLDIRFGKCVHTRILKNGYESDLYSSTSLMHIYVCCADLGSGEKLFEESPKWNV 126
+ AC + G+ +H R L+ + + T+LM +Y D + K+F + K +V
Sbjct: 321 ISACTHMGFRSTGRSLHARALRASFHEFVAIGTALMDMYAKAGDADTALKIFSKLRKKDV 380
Query: 125 VGWTTLIAGYVNNDRASDAIRVFKEMECEG-VEPNEITMVNV 3
+ WTT+I+G + +A+ VF+ ME E V P++IT + V
Sbjct: 381 MAWTTMISGLAIQGKGKEALNVFRRMEEEAEVAPDQITYIAV 422
>ref|NP_187175.2| mitochondrial editing factor 19 [Arabidopsis thaliana]
gi|218546759|sp|Q9MA95.2|PP214_ARATH RecName:
Full=Putative pentatricopeptide repeat-containing
protein At3g05240 gi|332640689|gb|AEE74210.1|
mitochondrial editing factor 19 [Arabidopsis thaliana]
Length = 565
Score = 122 bits (305), Expect = 4e-26
Identities = 51/101 (50%), Positives = 77/101 (76%)
Frame = -1
Query: 305 LKACAAVLDIRFGKCVHTRILKNGYESDLYSSTSLMHIYVCCADLGSGEKLFEESPKWNV 126
LKAC+ + DI+FG CVH ++K G+E ++Y ST L+H+Y+CC ++ G ++FE+ P+WNV
Sbjct: 114 LKACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNV 173
Query: 125 VGWTTLIAGYVNNDRASDAIRVFKEMECEGVEPNEITMVNV 3
V W +LI+G+VNN+R SDAI F+EM+ GV+ NE MV++
Sbjct: 174 VAWGSLISGFVNNNRFSDAIEAFREMQSNGVKANETIMVDL 214
Score = 59.3 bits (142), Expect = 3e-07
Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 8/109 (7%)
Frame = -1
Query: 305 LKACAAVLDIRFGKCVHTRILKNGYESDLYS--------STSLMHIYVCCADLGSGEKLF 150
L AC DI GK H + G++ S +TSL+ +Y C DL + LF
Sbjct: 215 LVACGRCKDIVTGKWFHGFLQGLGFDPYFQSKVGFNVILATSLIDMYAKCGDLRTARYLF 274
Query: 149 EESPKWNVVGWTTLIAGYVNNDRASDAIRVFKEMECEGVEPNEITMVNV 3
+ P+ +V W ++I GY N A +A+ +F +M G+ P+++T ++V
Sbjct: 275 DGMPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDLGIAPDKVTFLSV 323