BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00020350
         (641 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI22748.3| unnamed protein product [Vitis vinifera]              142   5e-32
ref|XP_002268211.1| PREDICTED: pentatricopeptide repeat-containi...   141   9e-32
ref|XP_002510791.1| pentatricopeptide repeat-containing protein,...   140   2e-31
ref|XP_004157226.1| PREDICTED: pentatricopeptide repeat-containi...   134   1e-29
ref|XP_004140840.1| PREDICTED: pentatricopeptide repeat-containi...   134   1e-29

>emb|CBI22748.3| unnamed protein product [Vitis vinifera]
          Length = 518

 Score =  142 bits (358), Expect = 5e-32
 Identities = 89/214 (41%), Positives = 124/214 (57%), Gaps = 27/214 (12%)
 Frame = -1

Query: 563 LVLTMNFTIHCGRRISGDFLKFRVILRSMCSASGKDNGG----------KNGYEQN---- 426
           ++LTMN     G R+   F  F    RS  S S K++ G          KNG E +    
Sbjct: 1   MILTMNSIALFGPRL---FRIFPCFCRSSRSFSTKNSDGGEMDDGFMRVKNGGEMDDKFM 57

Query: 425 -LDLDSTLD------WKPIGDDTLLGVSSQLSDDDEQND------TXXXXXXXXXXXEDV 285
            ++    +D       KP+ +   +     +SD++  +D      +           +++
Sbjct: 58  RIENGGEMDDGFMRIEKPLSEAWGVSNFDPVSDENPDSDNGIGSSSPAEFLAGKGYFDNM 117

Query: 284 RFSVDRVIEVLQQDGPGFDTKLALDELRLRVSNYLVREVLIRVLKSIHHSNKSRCAKLGY 105
           R    RV+++LQQD PGF TK ALDEL++RVS  LVREVL+ +LK+++++NK RCAKLGY
Sbjct: 118 RLDASRVLQILQQDCPGFSTKAALDELQIRVSGGLVREVLLEILKTVNYTNKERCAKLGY 177

Query: 104 KFFVWSGQQVNYRYTSNAYHLIMKIFAECEEFKA 3
           KFF+WSGQQ NYR+T NAYHLIMKIFAE +EFKA
Sbjct: 178 KFFMWSGQQENYRHTVNAYHLIMKIFAESDEFKA 211


>ref|XP_002268211.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g55630-like [Vitis vinifera]
          Length = 514

 Score =  141 bits (356), Expect = 9e-32
 Identities = 65/96 (67%), Positives = 82/96 (85%)
 Frame = -1

Query: 290 DVRFSVDRVIEVLQQDGPGFDTKLALDELRLRVSNYLVREVLIRVLKSIHHSNKSRCAKL 111
           ++R    RV+++LQQD PGF TK ALDEL++RVS  LVREVL+ +LK+++++NK RCAKL
Sbjct: 112 NMRLDASRVLQILQQDCPGFSTKAALDELQIRVSGGLVREVLLEILKTVNYTNKERCAKL 171

Query: 110 GYKFFVWSGQQVNYRYTSNAYHLIMKIFAECEEFKA 3
           GYKFF+WSGQQ NYR+T NAYHLIMKIFAE +EFKA
Sbjct: 172 GYKFFMWSGQQENYRHTVNAYHLIMKIFAESDEFKA 207


>ref|XP_002510791.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223549906|gb|EEF51393.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 475

 Score =  140 bits (353), Expect = 2e-31
 Identities = 82/183 (44%), Positives = 102/183 (55%)
 Frame = -1

Query: 551 MNFTIHCGRRISGDFLKFRVILRSMCSASGKDNGGKNGYEQNLDLDSTLDWKPIGDDTLL 372
           MN     G R+   F    V  R +C  S   +   NG+    +    L WK        
Sbjct: 1   MNTIALSGTRMVHKFSYILVFSRKLCDCSFDGDKSDNGFRYIEEPLKRL-WK-------- 51

Query: 371 GVSSQLSDDDEQNDTXXXXXXXXXXXEDVRFSVDRVIEVLQQDGPGFDTKLALDELRLRV 192
             +S       +N             E+VR    RV+++L+QDGPGFD K AL EL LRV
Sbjct: 52  --NSDFGSCGSENRDNGNYSQRKWFFENVRIDAARVLDILRQDGPGFDAKAALSELDLRV 109

Query: 191 SNYLVREVLIRVLKSIHHSNKSRCAKLGYKFFVWSGQQVNYRYTSNAYHLIMKIFAECEE 12
           S  LVREVL  +L++I   NK+RCAKLGYKFF+WS QQ NYR+T+N YHLIMKIFA+CEE
Sbjct: 110 SGLLVREVLAGILRNIGIDNKTRCAKLGYKFFIWSSQQENYRHTANNYHLIMKIFADCEE 169

Query: 11  FKA 3
           FKA
Sbjct: 170 FKA 172


>ref|XP_004157226.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g55630-like [Cucumis sativus]
          Length = 476

 Score =  134 bits (338), Expect = 1e-29
 Identities = 64/96 (66%), Positives = 79/96 (82%)
 Frame = -1

Query: 290 DVRFSVDRVIEVLQQDGPGFDTKLALDELRLRVSNYLVREVLIRVLKSIHHSNKSRCAKL 111
           D +   ++VIE+L+QDGPGFDT LALDEL+L+VS  LV EVL  +LKS    NK++CAKL
Sbjct: 74  DAKIDAEKVIEILKQDGPGFDTFLALDELQLKVSGVLVGEVLKGILKSKSVLNKTQCAKL 133

Query: 110 GYKFFVWSGQQVNYRYTSNAYHLIMKIFAECEEFKA 3
           GYKFF+WSG+  NYR+T N+YH+IMKIFAECEEFKA
Sbjct: 134 GYKFFIWSGRIENYRHTVNSYHIIMKIFAECEEFKA 169


>ref|XP_004140840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g55630-like [Cucumis sativus]
          Length = 476

 Score =  134 bits (338), Expect = 1e-29
 Identities = 64/96 (66%), Positives = 79/96 (82%)
 Frame = -1

Query: 290 DVRFSVDRVIEVLQQDGPGFDTKLALDELRLRVSNYLVREVLIRVLKSIHHSNKSRCAKL 111
           D +   ++VIE+L+QDGPGFDT LALDEL+L+VS  LV EVL  +LKS    NK++CAKL
Sbjct: 74  DAKIDAEKVIEILKQDGPGFDTFLALDELQLKVSGVLVGEVLKGILKSKSVLNKTQCAKL 133

Query: 110 GYKFFVWSGQQVNYRYTSNAYHLIMKIFAECEEFKA 3
           GYKFF+WSG+  NYR+T N+YH+IMKIFAECEEFKA
Sbjct: 134 GYKFFIWSGRIENYRHTVNSYHIIMKIFAECEEFKA 169