BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00020349
         (221 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002529988.1| conserved hypothetical protein [Ricinus comm...    86   1e-17
ref|XP_004142479.1| PREDICTED: retinoblastoma-related protein-li...    86   3e-17
ref|XP_004157544.1| PREDICTED: retinoblastoma-related protein-li...    86   4e-17
ref|XP_003546699.1| PREDICTED: retinoblastoma-related protein 1-...    82   8e-17
gb|AAF61377.1|AF133675_1 retinoblastoma-related protein 1 [Popul...    82   4e-16

>ref|XP_002529988.1| conserved hypothetical protein [Ricinus communis]
           gi|254789790|sp|B9SVG9.1|RBR_RICCO RecName:
           Full=Retinoblastoma-related protein
           gi|223530511|gb|EEF32393.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 1020

 Score = 86.3 bits (212), Expect(2) = 1e-17
 Identities = 41/50 (82%), Positives = 44/50 (88%)
 Frame = +3

Query: 24  VTRRAHMILEAIFPRIALGERCLTGTLQSANLMDNIWVEQRRTEALKLYY 173
           V RRAH+ILEAIFP  ALGERC+TG+LQS NLMDNIW EQRR EALKLYY
Sbjct: 457 VIRRAHIILEAIFPSNALGERCVTGSLQSTNLMDNIWAEQRRLEALKLYY 506



 Score = 28.1 bits (61), Expect(2) = 1e-17
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +2

Query: 167 ILYRVLEAMCKTEAQVV 217
           + YRVLEAMC  EAQ++
Sbjct: 504 LYYRVLEAMCTAEAQIL 520


>ref|XP_004142479.1| PREDICTED: retinoblastoma-related protein-like [Cucumis sativus]
          Length = 1024

 Score = 85.9 bits (211), Expect(2) = 3e-17
 Identities = 40/50 (80%), Positives = 44/50 (88%)
 Frame = +3

Query: 24  VTRRAHMILEAIFPRIALGERCLTGTLQSANLMDNIWVEQRRTEALKLYY 173
           V RRAH+ILEAIFP  ALGERC+ G+LQSA+LMDNIW EQRR EALKLYY
Sbjct: 462 VVRRAHIILEAIFPNTALGERCIAGSLQSASLMDNIWAEQRRLEALKLYY 511



 Score = 27.3 bits (59), Expect(2) = 3e-17
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +2

Query: 167 ILYRVLEAMCKTEAQVV 217
           + YRVLEAMC+ E+Q++
Sbjct: 509 LYYRVLEAMCRAESQML 525


>ref|XP_004157544.1| PREDICTED: retinoblastoma-related protein-like [Cucumis sativus]
          Length = 1125

 Score = 85.5 bits (210), Expect(2) = 4e-17
 Identities = 40/50 (80%), Positives = 43/50 (86%)
 Frame = +3

Query: 24  VTRRAHMILEAIFPRIALGERCLTGTLQSANLMDNIWVEQRRTEALKLYY 173
           V RRAH+ILEAIFP  ALGERC+ G LQSA+LMDNIW EQRR EALKLYY
Sbjct: 563 VVRRAHIILEAIFPNTALGERCIAGNLQSASLMDNIWAEQRRLEALKLYY 612



 Score = 27.3 bits (59), Expect(2) = 4e-17
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +2

Query: 167 ILYRVLEAMCKTEAQVV 217
           + YRVLEAMC+ E+Q++
Sbjct: 610 LYYRVLEAMCRAESQML 626


>ref|XP_003546699.1| PREDICTED: retinoblastoma-related protein 1-like [Glycine max]
          Length = 1002

 Score = 82.4 bits (202), Expect(2) = 8e-17
 Identities = 39/50 (78%), Positives = 43/50 (86%)
 Frame = +3

Query: 24  VTRRAHMILEAIFPRIALGERCLTGTLQSANLMDNIWVEQRRTEALKLYY 173
           V RRA +IL+AIFP   LGERC+TG+LQSANLMDNIW EQRR EALKLYY
Sbjct: 446 VVRRAQIILQAIFPSSPLGERCVTGSLQSANLMDNIWAEQRRLEALKLYY 495



 Score = 29.3 bits (64), Expect(2) = 8e-17
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = +2

Query: 167 ILYRVLEAMCKTEAQV 214
           + YRVLEAMC+ EAQV
Sbjct: 493 LYYRVLEAMCRAEAQV 508


>gb|AAF61377.1|AF133675_1 retinoblastoma-related protein 1 [Populus tremula x Populus
           tremuloides]
          Length = 1035

 Score = 82.4 bits (202), Expect(2) = 4e-16
 Identities = 39/50 (78%), Positives = 43/50 (86%)
 Frame = +3

Query: 24  VTRRAHMILEAIFPRIALGERCLTGTLQSANLMDNIWVEQRRTEALKLYY 173
           V RRA +ILEAIFP  +LGERC+TG+LQS NLMDNIW EQRR EALKLYY
Sbjct: 473 VIRRAQIILEAIFPSSSLGERCVTGSLQSTNLMDNIWAEQRRLEALKLYY 522



 Score = 26.9 bits (58), Expect(2) = 4e-16
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +2

Query: 167 ILYRVLEAMCKTEAQVV 217
           + YRVLE+MC  EAQ++
Sbjct: 520 LYYRVLESMCTAEAQIL 536