BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00020289
         (1046 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269817.1| PREDICTED: ribonuclease H2 subunit A isoform...   478   e-133
ref|XP_002311009.1| predicted protein [Populus trichocarpa] gi|2...   475   e-132
ref|XP_004152096.1| PREDICTED: ribonuclease H2 subunit A-like [C...   467   e-129
ref|XP_002515756.1| ribonuclease hi large subunit, putative [Ric...   461   e-127
ref|XP_002441851.1| hypothetical protein SORBIDRAFT_08g003480 [S...   451   e-124

>ref|XP_002269817.1| PREDICTED: ribonuclease H2 subunit A isoform 1 [Vitis vinifera]
            gi|296086584|emb|CBI32219.3| unnamed protein product
            [Vitis vinifera]
          Length = 297

 Score =  478 bits (1231), Expect = e-133
 Identities = 240/298 (80%), Positives = 264/298 (88%), Gaps = 2/298 (0%)
 Frame = -2

Query: 1024 MGSE-GIREWGSKPCMMGIDEAGRGPVLGPMVYGCLYCSVSYKDTLSTLSFADSKTLKEE 848
            MGSE  + +W S+PCMMGIDEAGRGPVLGPMVYGCLYC+ SY +TLSTL+FADSKTLKEE
Sbjct: 1    MGSETALPKWASEPCMMGIDEAGRGPVLGPMVYGCLYCARSYHNTLSTLNFADSKTLKEE 60

Query: 847  KREELFENLKADESIGWAFDIIDPRELSAKMLKRTKINLNEISHDSASGLVARVLELGVL 668
            KREELFENLKADESIGWA D+IDP ELSAKMLK+ KINLNEISHDSA GL+ RVL +GVL
Sbjct: 61   KREELFENLKADESIGWAVDVIDPWELSAKMLKKNKINLNEISHDSAIGLITRVLNMGVL 120

Query: 667  LTEVYVDTVGDPEKYRIKLSERFPSVKFVVAKKADSLYPVVSGASIVAKVTRDRALRNWV 488
            LTEVYVDTVGD EKYRIKLSERFP+VKFVVAKKADSLYPVVSGASIVAKVTRDRALR+WV
Sbjct: 121  LTEVYVDTVGDAEKYRIKLSERFPAVKFVVAKKADSLYPVVSGASIVAKVTRDRALRDWV 180

Query: 487  PDETAENMHTKFGSGYPGDPATKAWLDDHKHSVFGFPTLVRFSWGTCTPYFKKLVEVLWE 308
              ETAENMH  FGSGYPGDP TK+WL  HKHSVFGFPTLVRFSWGTCT Y K +VEVLWE
Sbjct: 181  LVETAENMHRNFGSGYPGDPVTKSWLQHHKHSVFGFPTLVRFSWGTCTAYSKDIVEVLWE 240

Query: 307  AD-LDEESSSDKNGNCRQLKLSSVGVTGYKRKSEEIESTGKSRCKFFETRKLDLLTRF 137
            AD ++E+ S+++NG  RQLKLSSVG    KRKSEEIES+GK RCKFF+ RKL+ LT+F
Sbjct: 241  ADKVEEDGSTNRNGK-RQLKLSSVGFIESKRKSEEIESSGKGRCKFFQARKLEQLTQF 297


>ref|XP_002311009.1| predicted protein [Populus trichocarpa] gi|222850829|gb|EEE88376.1|
            predicted protein [Populus trichocarpa]
          Length = 297

 Score =  475 bits (1223), Expect = e-132
 Identities = 236/297 (79%), Positives = 258/297 (86%), Gaps = 1/297 (0%)
 Frame = -2

Query: 1024 MGSEGIR-EWGSKPCMMGIDEAGRGPVLGPMVYGCLYCSVSYKDTLSTLSFADSKTLKEE 848
            M SE I  +W SKPC+MGIDEAGRGPVLGPMVYGCLYC+ SY+ TLSTL FADSKTLKEE
Sbjct: 1    MESESILPDWASKPCIMGIDEAGRGPVLGPMVYGCLYCARSYEKTLSTLKFADSKTLKEE 60

Query: 847  KREELFENLKADESIGWAFDIIDPRELSAKMLKRTKINLNEISHDSASGLVARVLELGVL 668
            KREELFE LKA+E IGWA D+IDPRELSAKMLK+ KINLNEISHDSASGLV RVL +GVL
Sbjct: 61   KREELFEKLKANELIGWAVDVIDPRELSAKMLKKIKINLNEISHDSASGLVTRVLNMGVL 120

Query: 667  LTEVYVDTVGDPEKYRIKLSERFPSVKFVVAKKADSLYPVVSGASIVAKVTRDRALRNWV 488
            LT+VYVDTVGDPEKYRIKLSERFPS+KFVVAKKADSLYPVVSGASIVAKVTRDRALR+WV
Sbjct: 121  LTDVYVDTVGDPEKYRIKLSERFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRALRDWV 180

Query: 487  PDETAENMHTKFGSGYPGDPATKAWLDDHKHSVFGFPTLVRFSWGTCTPYFKKLVEVLWE 308
             DETAENM   FGSGYPGDP TK+WL+ H+HSVFGFP+LVRFSWGTCT Y K +VEV+WE
Sbjct: 181  LDETAENMTRNFGSGYPGDPETKSWLEKHQHSVFGFPSLVRFSWGTCTSYSKNMVEVVWE 240

Query: 307  ADLDEESSSDKNGNCRQLKLSSVGVTGYKRKSEEIESTGKSRCKFFETRKLDLLTRF 137
            +D  EE  S  +   RQLKLSS GVT  KRKSEEIES+GKSRCKFF+ RKL+ L  F
Sbjct: 241  SDKTEEDGSSSSSGKRQLKLSSFGVTTSKRKSEEIESSGKSRCKFFQARKLEQLANF 297


>ref|XP_004152096.1| PREDICTED: ribonuclease H2 subunit A-like [Cucumis sativus]
            gi|449529756|ref|XP_004171864.1| PREDICTED: ribonuclease
            H2 subunit A-like [Cucumis sativus]
          Length = 297

 Score =  467 bits (1202), Expect = e-129
 Identities = 224/293 (76%), Positives = 255/293 (87%)
 Frame = -2

Query: 1015 EGIREWGSKPCMMGIDEAGRGPVLGPMVYGCLYCSVSYKDTLSTLSFADSKTLKEEKREE 836
            + + +W SKPC+MGIDEAGRGPVLGPMVYGCLYC+ SY   LS+L+FADSKTLKEEKREE
Sbjct: 5    DSLPKWTSKPCVMGIDEAGRGPVLGPMVYGCLYCASSYLKQLSSLNFADSKTLKEEKREE 64

Query: 835  LFENLKADESIGWAFDIIDPRELSAKMLKRTKINLNEISHDSASGLVARVLELGVLLTEV 656
            LFE+LKA+ESIGWA D+IDPRELS+KML + KINLNEISHDSA GLV +VL +GVLLTEV
Sbjct: 65   LFEDLKANESIGWAVDVIDPRELSSKMLNKVKINLNEISHDSAMGLVTKVLSMGVLLTEV 124

Query: 655  YVDTVGDPEKYRIKLSERFPSVKFVVAKKADSLYPVVSGASIVAKVTRDRALRNWVPDET 476
            YVDTVGDPEKYRIKLSE+FP++KFVVAKKADSLYPVVSGASIVAKVTRDRALR W  +ET
Sbjct: 125  YVDTVGDPEKYRIKLSEKFPNIKFVVAKKADSLYPVVSGASIVAKVTRDRALREWALEET 184

Query: 475  AENMHTKFGSGYPGDPATKAWLDDHKHSVFGFPTLVRFSWGTCTPYFKKLVEVLWEADLD 296
            AENMH  FGSGYPGDP TK WL+DHKHSVFGFPTLVRFSWGTCT YFK +VEV WE+D  
Sbjct: 185  AENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTCTSYFKDVVEVSWESDKV 244

Query: 295  EESSSDKNGNCRQLKLSSVGVTGYKRKSEEIESTGKSRCKFFETRKLDLLTRF 137
            +E  +      +QL+LS+VG+T  KRKSEEIES+GK RCKFF+ RKL+ L+RF
Sbjct: 245  DEDGATGGSGKKQLRLSNVGITTSKRKSEEIESSGKGRCKFFQARKLEQLSRF 297


>ref|XP_002515756.1| ribonuclease hi large subunit, putative [Ricinus communis]
            gi|223545084|gb|EEF46595.1| ribonuclease hi large
            subunit, putative [Ricinus communis]
          Length = 299

 Score =  461 bits (1187), Expect = e-127
 Identities = 231/300 (77%), Positives = 259/300 (86%), Gaps = 4/300 (1%)
 Frame = -2

Query: 1024 MGSEG---IREWGSKPCMMGIDEAGRGPVLGPMVYGCLYCSVSYKDTLSTLSFADSKTLK 854
            MGSE    + +W SKPC+MGIDEAGRGPVLGPMVYGCLYC+ SY+ TLSTLSFADSKTLK
Sbjct: 1    MGSETQSTLPKWASKPCIMGIDEAGRGPVLGPMVYGCLYCARSYERTLSTLSFADSKTLK 60

Query: 853  EEKREELFENLKADESIGWAFDIIDPRELSAKMLKRTKINLNEISHDSASGLVARVLELG 674
            E+KREELFENLKA+ESIGWA D+IDPRELSAKML++ KINLNEISH+SA GL+ RVL  G
Sbjct: 61   EDKREELFENLKANESIGWAVDVIDPRELSAKMLQKNKINLNEISHESAIGLITRVLNEG 120

Query: 673  VLLTEVYVDTVGDPEKYRIKLSERFPSVKFVVAKKADSLYPVVSGASIVAKVTRDRALRN 494
            VLLT+VY+DTVGD EKYRIKLSERFPS+KFVVAKKADSLYPVVSGASIVAKVTRDRALRN
Sbjct: 121  VLLTQVYLDTVGDAEKYRIKLSERFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRALRN 180

Query: 493  WVPDETAENMHTKFGSGYPGDPATKAWLDDHKHSVFGFPTLVRFSWGTCTPYFKKLVEVL 314
            WV +ETAE +   FGSGYPGDP TKAWL  HKH VFGFPTLVRFSWGTC  Y+K  VEVL
Sbjct: 181  WVLEETAEGISRNFGSGYPGDPETKAWLKQHKHQVFGFPTLVRFSWGTCNSYYKDAVEVL 240

Query: 313  WEAD-LDEESSSDKNGNCRQLKLSSVGVTGYKRKSEEIESTGKSRCKFFETRKLDLLTRF 137
            WE+D +DE+ S + NG  RQLKLSS G+T  K KSEEIES+GK RCKFF++RKL+ L+ F
Sbjct: 241  WESDKMDEDDSVNSNGK-RQLKLSSFGITIPKTKSEEIESSGKGRCKFFQSRKLEQLSHF 299


>ref|XP_002441851.1| hypothetical protein SORBIDRAFT_08g003480 [Sorghum bicolor]
            gi|241942544|gb|EES15689.1| hypothetical protein
            SORBIDRAFT_08g003480 [Sorghum bicolor]
          Length = 297

 Score =  451 bits (1161), Expect = e-124
 Identities = 213/292 (72%), Positives = 253/292 (86%), Gaps = 1/292 (0%)
 Frame = -2

Query: 1009 IREWGSK-PCMMGIDEAGRGPVLGPMVYGCLYCSVSYKDTLSTLSFADSKTLKEEKREEL 833
            + EW +K PC+MGIDEAGRGPVLGPMVYGC+YC+ SY +TLSTL FADSKTLKEE+REEL
Sbjct: 5    VPEWATKEPCLMGIDEAGRGPVLGPMVYGCMYCARSYNNTLSTLKFADSKTLKEEQREEL 64

Query: 832  FENLKADESIGWAFDIIDPRELSAKMLKRTKINLNEISHDSASGLVARVLELGVLLTEVY 653
            FE+LK + SIGW  D+I P++LSAKMLK++K+NLNEISH+SA GLV +VL++G+LL EVY
Sbjct: 65   FESLKVNSSIGWEVDVICPKDLSAKMLKKSKVNLNEISHNSAMGLVRKVLDMGILLAEVY 124

Query: 652  VDTVGDPEKYRIKLSERFPSVKFVVAKKADSLYPVVSGASIVAKVTRDRALRNWVPDETA 473
            +DTVGDPEKYRIKL+E+FP +KFVVAKKADSLYPVVSGASIVAKVTRDRALRNWV DETA
Sbjct: 125  IDTVGDPEKYRIKLTEKFPGIKFVVAKKADSLYPVVSGASIVAKVTRDRALRNWVFDETA 184

Query: 472  ENMHTKFGSGYPGDPATKAWLDDHKHSVFGFPTLVRFSWGTCTPYFKKLVEVLWEADLDE 293
             ++H K GSGYPGDP TK WL+DHKH VFGFPTLVRFSWGTC P+FK  VEV WE+D  +
Sbjct: 185  LSLHMKTGSGYPGDPDTKQWLEDHKHPVFGFPTLVRFSWGTCKPFFKDAVEVTWESDEVD 244

Query: 292  ESSSDKNGNCRQLKLSSVGVTGYKRKSEEIESTGKSRCKFFETRKLDLLTRF 137
            E  +D     RQ+KLSS+G TG+KRK+EEIES+GK RCKFF+ RKL+L+ +F
Sbjct: 245  EDGTDNGSTKRQVKLSSLGFTGFKRKTEEIESSGKGRCKFFQARKLELVRKF 296