BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00020276
         (253 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282466.1| PREDICTED: pentatricopeptide repeat-containi...   106   2e-21
emb|CAN64903.1| hypothetical protein VITISV_019802 [Vitis vinifera]   106   2e-21
ref|XP_003590730.1| Pentatricopeptide repeat-containing protein ...    98   6e-19
ref|XP_003535458.1| PREDICTED: pentatricopeptide repeat-containi...    92   3e-17
ref|XP_004166884.1| PREDICTED: pentatricopeptide repeat-containi...    88   6e-16

>ref|XP_002282466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Vitis vinifera]
          Length = 625

 Score =  106 bits (265), Expect = 2e-21
 Identities = 51/86 (59%), Positives = 64/86 (74%), Gaps = 2/86 (2%)
 Frame = +1

Query: 1   EMAQRSSASWNVMISSFAGLGNNGFSEDLWKFVKQMQGEGVRLDAFTVSSLLPLCGFSTG 180
           EM  R+S SWNV+I+ +A  GN  F E+ W+FVKQMQ + VR DA+T+SSLLPLC    G
Sbjct: 184 EMTIRNSGSWNVLIAGYAVSGNCNFREETWEFVKQMQMDEVRPDAYTISSLLPLCDGDKG 243

Query: 181 KWDHGREIHCVIMKNG--LDVDSDVH 252
           KWD+GRE+HC I+KN   L +DSDVH
Sbjct: 244 KWDYGRELHCYIVKNELVLGLDSDVH 269


>emb|CAN64903.1| hypothetical protein VITISV_019802 [Vitis vinifera]
          Length = 625

 Score =  106 bits (265), Expect = 2e-21
 Identities = 51/86 (59%), Positives = 64/86 (74%), Gaps = 2/86 (2%)
 Frame = +1

Query: 1   EMAQRSSASWNVMISSFAGLGNNGFSEDLWKFVKQMQGEGVRLDAFTVSSLLPLCGFSTG 180
           EM  R+S SWNV+I+ +A  GN  F E+ W+FVKQMQ + VR DA+T+SSLLPLC    G
Sbjct: 184 EMTIRNSGSWNVLIAGYAVSGNCNFREETWEFVKQMQMDEVRPDAYTISSLLPLCDGDMG 243

Query: 181 KWDHGREIHCVIMKNG--LDVDSDVH 252
           KWD+GRE+HC I+KN   L +DSDVH
Sbjct: 244 KWDYGRELHCYIVKNELVLGLDSDVH 269


>ref|XP_003590730.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355479778|gb|AES60981.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 627

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 50/88 (56%), Positives = 64/88 (72%), Gaps = 4/88 (4%)
 Frame = +1

Query: 1   EMAQRSSASWNVMISSFAGLGNNGFS--EDLWKFVKQMQGEGVRLDAFTVSSLLPLCGFS 174
           EM QR+  S+NV+IS  A LGN  +S   DLW F ++MQ +G   DAFTV+SLLP+C  S
Sbjct: 186 EMPQRNVGSFNVIISGCAALGNLDYSLYADLWNFFRRMQCQGYNADAFTVASLLPMCCDS 245

Query: 175 TGKWDHGREIHCVIMKNGLDVD--SDVH 252
            GK+DHGRE+HC ++KNGLD+   SDVH
Sbjct: 246 DGKFDHGRELHCYLVKNGLDLKMCSDVH 273


>ref|XP_003535458.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 630

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 48/88 (54%), Positives = 62/88 (70%), Gaps = 4/88 (4%)
 Frame = +1

Query: 1   EMAQRSSASWNVMISSFAGLGNNGFS--EDLWKFVKQMQGEGVRLDAFTVSSLLPLCGFS 174
           E   R+  S+NV+IS  A L N  F+  +DL  F  +MQ EG + DAFTV+SLLP+C   
Sbjct: 189 ETPHRNVGSFNVVISGCAALENCNFTSHDDLSNFFLRMQCEGFKADAFTVASLLPVCCGD 248

Query: 175 TGKWDHGREIHCVIMKNGLD--VDSDVH 252
           TGKWD+GRE+HC ++KNGLD  +DSDVH
Sbjct: 249 TGKWDYGRELHCYVVKNGLDLKMDSDVH 276


>ref|XP_004166884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 636

 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 37/81 (45%), Positives = 58/81 (71%)
 Frame = +1

Query: 1   EMAQRSSASWNVMISSFAGLGNNGFSEDLWKFVKQMQGEGVRLDAFTVSSLLPLCGFSTG 180
           EM +R+S SWNV+++ +A   +  + ++ W+ V+ MQ +G++ DAFT+SSLL  CG   G
Sbjct: 191 EMPERNSGSWNVLLAGYASFSDCFYVKEAWEAVRNMQIDGIKPDAFTISSLLQFCGHPNG 250

Query: 181 KWDHGREIHCVIMKNGLDVDS 243
           K  +G+E+HC I+KN LD+DS
Sbjct: 251 KLSYGKELHCYIVKNELDLDS 271