BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00020268
         (598 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabid...   187   2e-45
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta...   177   1e-42
gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa ...   172   3e-41
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta...   172   3e-41
emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulga...   171   7e-41

>emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
           gi|7267666|emb|CAB78094.1| RNA-directed DNA
           polymerase-like protein [Arabidopsis thaliana]
          Length = 1274

 Score =  187 bits (474), Expect = 2e-45
 Identities = 89/198 (44%), Positives = 131/198 (66%)
 Frame = +1

Query: 4   LTRVPSDAEIWASIKSMGAIKAPGPDGFQGIFYHKYWDTIHLEISEAVKAFFTFSKLASC 183
           L ++ S  EI  ++ S+ A KAPGPDGF   F+H YWD I  ++S  +++FF  S L+  
Sbjct: 365 LIKISSLLEIKEALFSISADKAPGPDGFSASFFHAYWDIIEADVSRDIRSFFVDSCLSPR 424

Query: 184 LNETFITLIPKVSNPEHITKFRPISLCNFSYEIISKIMATRLKPLLHKFISPLQGAFVKG 363
           LNET +TLIPK+S P  ++ +RPI+LCN  Y+I++KI+  RL+P L + IS  Q AFV G
Sbjct: 425 LNETHVTLIPKISAPRKVSDYRPIALCNVQYKIVAKILTRRLQPWLSELISLHQSAFVPG 484

Query: 364 RSIGDNIGLASEVLYNXXXXXXXXXGWMAIKLDMTKVFDRVEWCFVDQILGKLGFSAKWR 543
           R+I DN+ +  E+L+            MAIK DM+K +DR++W F+ ++L +LGF  KW 
Sbjct: 485 RAIADNVLITHEILHFLRVSGAKKYCSMAIKTDMSKAYDRIKWNFLQEVLMRLGFHDKWI 544

Query: 544 KMIQQCLSTVSYNILLNG 597
           + + QC+ TVSY+ L+NG
Sbjct: 545 RWVMQCVCTVSYSFLING 562


>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1229

 Score =  177 bits (449), Expect = 1e-42
 Identities = 85/198 (42%), Positives = 123/198 (62%)
 Frame = +1

Query: 4   LTRVPSDAEIWASIKSMGAIKAPGPDGFQGIFYHKYWDTIHLEISEAVKAFFTFSKLASC 183
           LTR+P+D E+  ++ S+ A KAPGPDGF   FYH YW  I  ++   ++ FFT       
Sbjct: 319 LTRIPNDEEVKDAVFSINASKAPGPDGFTAGFYHSYWHIISTDVGREIRLFFTSKNFPRR 378

Query: 184 LNETFITLIPKVSNPEHITKFRPISLCNFSYEIISKIMATRLKPLLHKFISPLQGAFVKG 363
           +NET I LIPK   P  +  +RPI+LCN  Y+I++KIM  R++ +L K IS  Q AFV G
Sbjct: 379 MNETHIRLIPKDLGPRKVADYRPIALCNIFYKIVAKIMTKRMQLILPKLISENQSAFVPG 438

Query: 364 RSIGDNIGLASEVLYNXXXXXXXXXGWMAIKLDMTKVFDRVEWCFVDQILGKLGFSAKWR 543
           R I DN+ +  EVL+            MA+K DM+K +DRVEW F+ ++L + GF + W 
Sbjct: 439 RVISDNVLITHEVLHFLRTSSAKKHCSMAVKTDMSKAYDRVEWDFLKKVLQRFGFHSIWI 498

Query: 544 KMIQQCLSTVSYNILLNG 597
             + +C+++VSY+ L+NG
Sbjct: 499 DWVLECVTSVSYSFLING 516


>gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1656

 Score =  172 bits (437), Expect = 3e-41
 Identities = 83/199 (41%), Positives = 123/199 (61%)
 Frame = +1

Query: 1    LLTRVPSDAEIWASIKSMGAIKAPGPDGFQGIFYHKYWDTIHLEISEAVKAFFTFSKLAS 180
            +L+   S  E+  ++  +GA KAPGPDGF GIFY   W+ +   I E+     T S L  
Sbjct: 1032 ILSSPVSLLEVKKAVFDLGATKAPGPDGFSGIFYQNQWEWVQSIIHESALQHQTSSSLLQ 1091

Query: 181  CLNETFITLIPKVSNPEHITKFRPISLCNFSYEIISKIMATRLKPLLHKFISPLQGAFVK 360
             +N T + LIPKV  P H + +RPI+LCNFSY+I++KI+A+RL+P + + IS  Q AFV 
Sbjct: 1092 VMNRTHLALIPKVKAPTHPSHYRPIALCNFSYKILTKIIASRLQPFMSELISDNQSAFVS 1151

Query: 361  GRSIGDNIGLASEVLYNXXXXXXXXXGWMAIKLDMTKVFDRVEWCFVDQILGKLGFSAKW 540
             R I DN+ +A E+ ++         G   +KLDM K +DRVEW F++ +L K+GF   W
Sbjct: 1152 NRQIQDNVIIAHEIYHHLKLTRSCNNGAFGLKLDMNKAYDRVEWNFLEAVLRKMGFVDSW 1211

Query: 541  RKMIQQCLSTVSYNILLNG 597
              ++  C++T S ++L+NG
Sbjct: 1212 IGLVMSCVTTSSLSVLING 1230


>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1715

 Score =  172 bits (437), Expect = 3e-41
 Identities = 82/193 (42%), Positives = 130/193 (67%)
 Frame = +1

Query: 19   SDAEIWASIKSMGAIKAPGPDGFQGIFYHKYWDTIHLEISEAVKAFFTFSKLASCLNETF 198
            +D E+  ++ ++GA +APG DGF   FYH  WD I  ++   V+ FF    + + +N+T 
Sbjct: 791  TDQEVRDAVFAIGADRAPGFDGFTAAFYHHLWDLIGNDVCLMVRHFFESDVMDNQINQTQ 850

Query: 199  ITLIPKVSNPEHITKFRPISLCNFSYEIISKIMATRLKPLLHKFISPLQGAFVKGRSIGD 378
            I LIPK+ +P+H++ +RPISLC  SY+IISKI+  RLK  L   IS  Q AFV G++I D
Sbjct: 851  ICLIPKIIDPKHMSDYRPISLCTASYKIISKILIKRLKQCLGDVISDSQAAFVPGQNISD 910

Query: 379  NIGLASEVLYNXXXXXXXXXGWMAIKLDMTKVFDRVEWCFVDQILGKLGFSAKWRKMIQQ 558
            N+ +A E+L++         G++A+K D++K +DRVEW F+++++ +LGF+ +W K I  
Sbjct: 911  NVLVAHELLHSLKSRRECQSGYVAVKTDISKAYDRVEWNFLEKVMIQLGFAPRWVKWIMT 970

Query: 559  CLSTVSYNILLNG 597
            C+++VSY +L+NG
Sbjct: 971  CVTSVSYEVLING 983


>emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1365

 Score =  171 bits (434), Expect = 7e-41
 Identities = 87/190 (45%), Positives = 121/190 (63%)
 Frame = +1

Query: 28   EIWASIKSMGAIKAPGPDGFQGIFYHKYWDTIHLEISEAVKAFFTFSKLASCLNETFITL 207
            E+   +  MG++KAPGPDG   IFY K+W  +  +I  AV  FFT   +    N+T I L
Sbjct: 445  EVRNVVFQMGSLKAPGPDGIPAIFYQKHWSIVGEDIWRAVSHFFTTGYILQEWNQTNICL 504

Query: 208  IPKVSNPEHITKFRPISLCNFSYEIISKIMATRLKPLLHKFISPLQGAFVKGRSIGDNIG 387
            IPKV  PE   +FRPISLCN  Y+IISKI+A RLKP+L   ++P Q AFV GR I DN  
Sbjct: 505  IPKVERPEQACQFRPISLCNVIYKIISKIIANRLKPILKSIVTPYQNAFVPGRLISDNCL 564

Query: 388  LASEVLYNXXXXXXXXXGWMAIKLDMTKVFDRVEWCFVDQILGKLGFSAKWRKMIQQCLS 567
            +A EV+              A+K+DM K +D+V+W F+  +L ++GF + +R+ I QC++
Sbjct: 565  IAHEVVNLIKQRKKGTHFLAALKIDMFKAYDKVDWDFLFWLLTQMGFPSFYRQWIMQCVT 624

Query: 568  TVSYNILLNG 597
            TVSY+I++NG
Sbjct: 625  TVSYSIIVNG 634